diff --git a/anatomical_map.json b/anatomical_map.json index ab7d275..9e05632 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -479,10 +479,18 @@ "term": "UBERON:0012402", "name": "small intestine smooth muscle longitudinal layer" }, + "digestive_36": { + "term": "ILX:0793739", + "name": "Nerve fiber from submandibular ganglion to sublingual gland" + }, "digestive_37": { "term": "UBERON:0012401", "name": "small intestine smooth muscle circular layer" }, + "digestive_38": { + "term": "ILX:0793738", + "name": "Nerve fiber from submandibular ganglion to mouth mucosa" + }, "digestive_39": { "term": "UBERON:0001238", "name": "lamina propria of small intestine" @@ -515,6 +523,10 @@ "term": "ILX:0770759", "name": "Lamina propria mucosae of descending colon" }, + "digestive_47": { + "term": "ILX:0793737", + "name": "Nerve fiber from submandibular ganglion to submandibular gland" + }, "digestive_48": { "term": "ILX:0771089", "name": "Serosa of descending colon" @@ -659,10 +671,6 @@ "term": "UBERON:0003216", "name": "hard palate" }, - "digestive_86": { - "term": "UBERON:0002059", - "name": "Submandibular ganglion" - }, "digestive_85": { "term": "UBERON:0000006", "name": "Islet of langerhans" @@ -783,6 +791,14 @@ "term": "UBERON:0003354", "name": "anal canal epithelium" }, + "digestive_116": { + "term": "UBERON:0001182", + "name": "superior mesenteric artery" + }, + "digestive_117": { + "term": "UBERON:0006637", + "name": "celiac trunk" + }, "skeleton_1": { "term": "UBERON:0001684", "name": "mandible" @@ -892,8 +908,8 @@ "name": "Epithelium of Vagina" }, "reproductive_23": { - "term": "UBERON:0009853", - "name": "Body of Uterus" + "term": "ILX:0794769", + "name": "Upper uterine segment" }, "reproductive_24": { "term": "UBERON:0001981", @@ -939,6 +955,34 @@ "term": "UBERON:0003984", "name": "Uterine tube infundibulum" }, + "reproductive_35": { + "term": "ILX:0794767", + "name": "smooth muscle of the upper uterus" + }, + "reproductive_36": { + "term": "ILX:0794765", + "name": "blood vessel of the upper uterus" + }, + "reproductive_37": { + "term": "ILX:0794770", + "name": "lower uterine segment" + }, + "reproductive_38": { + "term": "ILX:0794768", + "name": "smooth muscle of the lower uterus" + }, + "reproductive_39": { + "term": "ILX:0794766", + "name": "blood vessel of the lower uterus" + }, + "reproductive_40": { + "term": "ILX:0794731", + "name": "smooth muscle of the cervix" + }, + "reproductive_41": { + "term": "ILX:0794738", + "name": "blood vessel of the cervix" + }, "muscle_1": { "term": "ILX:0738319", "name": "T1-T2 intercostal muscle" diff --git a/connectivity_terms_female.json b/connectivity_terms_female.json index 0efddd9..d3974a4 100644 --- a/connectivity_terms_female.json +++ b/connectivity_terms_female.json @@ -29,19 +29,6 @@ ] ] }, - { - "id": [ - "ILX:0738291", - [] - ], - "name": "t1 - inferior cervical ganglion interganglionic segment of the sympathetic chain", - "aliases": [ - [ - "UBERON:0002441", - [] - ] - ] - }, { "id": [ "UBERON:0016578", @@ -195,22 +182,6 @@ "ILX:0793821", [] ], - [ - "ILX:0794732", - [] - ], - [ - "UBERON:0005734", - [ - "UBERON:0001182" - ] - ], - [ - "UBERON:0005734", - [ - "UBERON:0006637" - ] - ], [ "UBERON:0018676", [] @@ -284,21 +255,6 @@ ] ] }, - { - "id": [ - "UBERON:0005364", - [ - "UBERON:0005363" - ] - ], - "name": "", - "aliases": [ - [ - "UBERON:0003535", - [] - ] - ] - }, { "id": [ "UBERON:0016580", @@ -327,32 +283,6 @@ ] ] }, - { - "id": [ - "ILX:0786722", - [] - ], - "name": "third thoracic ganglion", - "aliases": [ - [ - "ILX:0793618", - [] - ] - ] - }, - { - "id": [ - "ILX:0786272", - [] - ], - "name": "fourth thoracic ganglion", - "aliases": [ - [ - "ILX:0793619", - [] - ] - ] - }, { "id": [ "UBERON:0006459", @@ -392,19 +322,6 @@ ] ] }, - { - "id": [ - "ILX:0786228", - [] - ], - "name": "", - "aliases": [ - [ - "ILX:0793617", - [] - ] - ] - }, { "id": [ "ILX:0789947", @@ -457,32 +374,6 @@ ] ] }, - { - "id": [ - "UBERON:0001736", - [] - ], - "name": "submandibular gland", - "aliases": [ - [ - "ILX:0793737", - [] - ] - ] - }, - { - "id": [ - "UBERON:0001832", - [] - ], - "name": "sublingual gland", - "aliases": [ - [ - "ILX:0793739", - [] - ] - ] - }, { "id": [ "UBERON:0001723", @@ -490,17 +381,9 @@ ], "name": "tongue", "aliases": [ - [ - "UBERON:0003721", - [] - ], [ "UBERON:0003729", [] - ], - [ - "ILX:0793738", - [] ] ] }, @@ -552,10 +435,6 @@ [ "UBERON:0001305", [] - ], - [ - "UBERON:0001190", - [] ] ] }, @@ -684,10 +563,6 @@ [ "ILX:0793816", [] - ], - [ - "UBERON:0007715", - [] ] ] }, @@ -792,19 +667,6 @@ ] ] }, - { - "id": [ - "UBERON:0005453", - [] - ], - "name": "inferior mesenteric ganglion", - "aliases": [ - [ - "UBERON:0035770", - [] - ] - ] - }, { "id": [ "UBERON:0011776", @@ -830,10 +692,6 @@ [ "UBERON:0015173", [] - ], - [ - "ILX:0794731", - [] ] ] }, @@ -854,40 +712,6 @@ ] ] }, - { - "id": [ - "UBERON:0009853", - [] - ], - "name": "body of uterus", - "aliases": [ - [ - "ILX:0794769", - [] - ], - [ - "ILX:0794767", - [] - ] - ] - }, - { - "id": [ - "UBERON:0000002", - [] - ], - "name": "uterine cervix", - "aliases": [ - [ - "ILX:0794770", - [] - ], - [ - "ILX:0794768", - [] - ] - ] - }, { "id": [ "UBERON:0001981", @@ -917,44 +741,6 @@ [ "UBERON:0006608", [] - ], - [ - "ILX:0793809", - [] - ] - ] - }, - { - "id": [ - "UBERON:0001981", - [ - "UBERON:0000002" - ] - ], - "name": "blood vessel/uterine cervix", - "aliases": [ - [ - "ILX:0794766", - [] - ], - [ - "ILX:0794738", - [] - ] - ] - }, - { - "id": [ - "UBERON:0001981", - [ - "UBERON:0009853" - ] - ], - "name": "blood vessel/body of uterus", - "aliases": [ - [ - "ILX:0794765", - [] ] ] }, @@ -1113,10 +899,6 @@ [ "UBERON:0004820", [] - ], - [ - "UBERON:0001279", - [] ] ] }, @@ -1154,6 +936,10 @@ [ "UBERON:0015423", [] + ], + [ + "UBERON:0001279", + [] ] ] }, @@ -1246,6 +1032,10 @@ [ "ILX:0794853", [] + ], + [ + "UBERON:0003535", + [] ] ] }, @@ -1528,66 +1318,6 @@ ] ] }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006457" - ] - ], - "name": "gray matter of spinal cord/T1 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0797432", - [] - ] - ] - }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006458" - ] - ], - "name": "gray matter of spinal cord/T2 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0797433", - [] - ] - ] - }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006459" - ] - ], - "name": "gray matter of spinal cord/T3 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0797434", - [] - ] - ] - }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006455" - ] - ], - "name": "gray matter of spinal cord/T7 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0796498", - [] - ] - ] - }, { "id": [ "UBERON:0018680", diff --git a/connectivity_terms_male.json b/connectivity_terms_male.json index 5f20f5b..b55c37f 100644 --- a/connectivity_terms_male.json +++ b/connectivity_terms_male.json @@ -12,19 +12,6 @@ ] ] }, - { - "id": [ - "ILX:0738291", - [] - ], - "name": "t1 - inferior cervical ganglion interganglionic segment of the sympathetic chain", - "aliases": [ - [ - "UBERON:0002441", - [] - ] - ] - }, { "id": [ "UBERON:0016578", @@ -178,22 +165,6 @@ "ILX:0793821", [] ], - [ - "ILX:0794732", - [] - ], - [ - "UBERON:0005734", - [ - "UBERON:0006637" - ] - ], - [ - "UBERON:0005734", - [ - "UBERON:0001182" - ] - ], [ "UBERON:0018676", [] @@ -267,21 +238,6 @@ ] ] }, - { - "id": [ - "UBERON:0005364", - [ - "UBERON:0005363" - ] - ], - "name": "", - "aliases": [ - [ - "UBERON:0003535", - [] - ] - ] - }, { "id": [ "UBERON:0016580", @@ -336,19 +292,6 @@ ] ] }, - { - "id": [ - "ILX:0786228", - [] - ], - "name": "", - "aliases": [ - [ - "ILX:0793617", - [] - ] - ] - }, { "id": [ "UBERON:0006459", @@ -362,32 +305,6 @@ ] ] }, - { - "id": [ - "ILX:0786722", - [] - ], - "name": "third thoracic ganglion", - "aliases": [ - [ - "ILX:0793618", - [] - ] - ] - }, - { - "id": [ - "ILX:0786272", - [] - ], - "name": "fourth thoracic ganglion", - "aliases": [ - [ - "ILX:0793619", - [] - ] - ] - }, { "id": [ "ILX:0786141", @@ -453,32 +370,6 @@ ] ] }, - { - "id": [ - "UBERON:0001736", - [] - ], - "name": "submandibular gland", - "aliases": [ - [ - "ILX:0793737", - [] - ] - ] - }, - { - "id": [ - "UBERON:0001832", - [] - ], - "name": "sublingual gland", - "aliases": [ - [ - "ILX:0793739", - [] - ] - ] - }, { "id": [ "UBERON:0001723", @@ -486,17 +377,9 @@ ], "name": "tongue", "aliases": [ - [ - "UBERON:0003721", - [] - ], [ "UBERON:0003729", [] - ], - [ - "ILX:0793738", - [] ] ] }, @@ -611,10 +494,6 @@ [ "UBERON:0002366", [] - ], - [ - "UBERON:0011183", - [] ] ] }, @@ -693,10 +572,6 @@ [ "ILX:0793816", [] - ], - [ - "UBERON:0007715", - [] ] ] }, @@ -713,19 +588,6 @@ ] ] }, - { - "id": [ - "UBERON:0005453", - [] - ], - "name": "inferior mesenteric ganglion", - "aliases": [ - [ - "UBERON:0035770", - [] - ] - ] - }, { "id": [ "UBERON:0011776", @@ -1097,6 +959,10 @@ [ "ILX:0794853", [] + ], + [ + "UBERON:0003535", + [] ] ] }, @@ -1392,66 +1258,6 @@ ] ] }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006457" - ] - ], - "name": "gray matter of spinal cord/T1 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0797432", - [] - ] - ] - }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006458" - ] - ], - "name": "gray matter of spinal cord/T2 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0797433", - [] - ] - ] - }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006459" - ] - ], - "name": "gray matter of spinal cord/T3 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0797434", - [] - ] - ] - }, - { - "id": [ - "UBERON:0002315", - [ - "UBERON:0006455" - ] - ], - "name": "gray matter of spinal cord/T7 segment of thoracic spinal cord", - "aliases": [ - [ - "ILX:0796498", - [] - ] - ] - }, { "id": [ "UBERON:0018680", diff --git a/human_flatmap_female.svg b/human_flatmap_female.svg index 4e92280..5fef6b9 100644 --- a/human_flatmap_female.svg +++ b/human_flatmap_female.svg @@ -2269,7 +2269,7 @@ - .class(spinal_32) id(S32_T7) + .class(spinal_32) id(S32_T7-Left) @@ -2478,7 +2478,7 @@ .class(spinal_33) id(S33_T3) - .class(spinal_32) style(1) closed + .id(S32_T1-Left) @@ -2532,7 +2532,7 @@ .class(spinal_33) id(S33_T2) - .class(spinal_32) style(1) closed + .id(S32_T2-Left) @@ -2592,7 +2592,7 @@ .class(spinal_33) id(S33_T1) - .class(spinal_32) style(1) closed + .id(S32_T1-Left) @@ -42734,8 +42734,8 @@ .id(digestive_63-1) - - .id(digestive_86-1) + + .id(ganglion_24-1) .id(digestive_89-1) @@ -42755,9 +42755,6 @@ .id(urinary_20-Right) - - .id(reproductive_15-1) - .id(reproductive_16-1) @@ -42776,15 +42773,6 @@ .id(reproductive_22-1) - - .id(reproductive_23-1) - - - .id(reproductive_24-1) - - - .id(reproductive_24-2) - .id(reproductive_24-3) @@ -43212,12 +43200,57 @@ .id(digestive_115-1) + + .id(digestive_47-1) + + + .id(digestive_36-1) + + + .id(digestive_38-1) + + + .id(reproductive_18-1) + + + .id(reproductive_18-2) + + + .id(reproductive_23-1) + + .id(reproductive_35-1) + + + .id(reproductive_36-1) + + + + .id(reproductive_37-1) + + .id(reproductive_38-1) + + + .id(reproductive_39-1) + + + + .id(reproductive_15-1) + + .id(reproductive_40-1) + + + .id(reproductive_41-1) + + + + .id(digestive_116-1) + + + .id(digestive_117-1) + ganglia - - .id(ganglion_1-1) - .id(ganglion_2-1) @@ -44734,6 +44767,9 @@ .id(plexus_29-1) + + .id(plexus_30-1) + cuffs @@ -45076,5 +45112,11 @@ .id(n_83_c) + + .id(lingual_c) + + + .id(clitoral_cavernous_c) + \ No newline at end of file diff --git a/human_flatmap_male.svg b/human_flatmap_male.svg index bf4e9fa..4e72812 100644 --- a/human_flatmap_male.svg +++ b/human_flatmap_male.svg @@ -2269,7 +2269,7 @@ - .class(spinal_32) id(S32_T7) + .class(spinal_32) id(S32_T7-Left) @@ -2478,7 +2478,7 @@ .class(spinal_33) id(S33_T3) - .class(spinal_32) style(1) closed + .id(S32_T3-Left) @@ -2532,7 +2532,7 @@ .class(spinal_33) id(S33_T2) - .class(spinal_32) style(1) closed + .id(S32_T2-Left) @@ -2592,7 +2592,7 @@ .class(spinal_33) id(S33_T1) - .class(spinal_32) style(1) closed + .id(S32_T1-Left) @@ -23893,8 +23893,8 @@ .id(digestive_63-1) - - .id(digestive_86-1) + + .id(ganglion_24-1) .id(digestive_89-1) @@ -24305,12 +24305,24 @@ .id(digestive_115-1) + + .id(digestive_47-1) + + + .id(digestive_36-1) + + + .id(digestive_38-1) + + + .id(digestive_116-1) + + + .id(digestive_117-1) + ganglia - - .id(ganglion_1-1) - .id(ganglion_2-1) @@ -25616,6 +25628,9 @@ .id(penile_cavernous_c) + + .id(lingual_c) + nodes diff --git a/properties.json b/properties.json index 37e5705..7376039 100644 --- a/properties.json +++ b/properties.json @@ -2635,6 +2635,12 @@ "trigeminal_nerve_afferent_cn_v_and_ganglion": { "class": "ganglion_23" }, + "ganglion_24-1": { + "models": "UBERON:0002059", + "name": "Submandibular ganglion", + "type": "ganglion", + "class": "auto-hide" + }, "ganglion_25-1": { "models": "ILX:0794910", "name": "Ovarian ganglion", @@ -3148,6 +3154,12 @@ "digestive_33-1": { "class": "digestive_33" }, + "digestive_36-1": { + "class": "digestive_36" + }, + "digestive_38-1": { + "class": "digestive_38" + }, "digestive_44-1": { "class": "digestive_44" }, @@ -3157,6 +3169,9 @@ "digestive_46-1": { "class": "digestive_46" }, + "digestive_47-1": { + "class": "digestive_47" + }, "digestive_48-1": { "class": "digestive_48" }, @@ -3313,9 +3328,6 @@ "digestive_85-1": { "class": "digestive_85" }, - "digestive_86-1": { - "class": "digestive_86" - }, "digestive_87-1": { "class": "digestive_87" }, @@ -3406,6 +3418,12 @@ "digestive_115-1": { "class": "digestive_115" }, + "digestive_116-1": { + "class": "digestive_116" + }, + "digestive_117-1": { + "class": "digestive_117" + }, "skeleton_1-1": { "class": "skeleton_1" }, @@ -3553,6 +3571,12 @@ "reproductive_17-1": { "class": "reproductive_17" }, + "reproductive_18-1": { + "class": "reproductive_18" + }, + "reproductive_18-2": { + "class": "reproductive_18" + }, "reproductive_19-1": { "class": "reproductive_19" }, @@ -3622,6 +3646,27 @@ "reproductive_34-2": { "class": "reproductive_34" }, + "reproductive_35-1": { + "class": "reproductive_35" + }, + "reproductive_36-1": { + "class": "reproductive_36" + }, + "reproductive_37-1": { + "class": "reproductive_37" + }, + "reproductive_38-1": { + "class": "reproductive_38" + }, + "reproductive_39-1": { + "class": "reproductive_39" + }, + "reproductive_40-1": { + "class": "reproductive_40" + }, + "reproductive_41-1": { + "class": "reproductive_41" + }, "respiratory_10-1": { "class": "respiratory_10" }, @@ -3766,6 +3811,18 @@ "spinal_31-19": { "class": "spinal_31" }, + "S32_T1-Left": { + "models": "ILX:0797432", + "name": "Dorsal grey horn of left T1" + }, + "S32_T2-Left": { + "models": "ILX:0797433", + "name": "Dorsal grey horn of left T2" + }, + "S32_T3-Left": { + "models": "ILX:0797434", + "name": "Dorsal grey horn of left T3" + }, "S32_T6": { "class": "spinal_32" }, @@ -3780,6 +3837,10 @@ "models": "ILX:0795041", "name": "Dorsal grey horn of right T7" }, + "S32_T7-Left": { + "models": "ILX:0796498", + "name": "Dorsal grey horn of left T7" + }, "S32_T8": { "class": "spinal_32" }, @@ -4096,6 +4157,12 @@ "type": "ganglion", "class": "auto-hide" }, + "plexus_30-1": { + "models": "ILX:0794732", + "name": "intermesenteric plexus", + "type": "ganglion", + "class": "auto-hide" + }, "label_8-1": { "class": "label_8" }, @@ -4540,6 +4607,14 @@ "type": "nerve", "models": "ILX:0793807" }, + "lingual_c": { + "type": "nerve", + "models": "UBERON:0003721" + }, + "clitoral_cavernous_c": { + "type": "nerve", + "models": "ILX:0793809" + }, "n_84_c": { "type": "nerve" }, diff --git a/proxy_features.json b/proxy_features.json index df87009..d062c4e 100644 --- a/proxy_features.json +++ b/proxy_features.json @@ -842,5 +842,82 @@ "proxies": [ "ILX:0785106" ] + }, + { + "feature": "UBERON:0002441", + "name": "cervicothoracic ganglion", + "proxies": [ + "ILX:0794890" + ] + }, + { + "feature": "ILX:0793617", + "name": "T2 sympathetic chain", + "proxies": [ + "ILX:0786012" + ] + }, + { + "feature": "ILX:0793618", + "name": "T3 sympathetic chain", + "proxies": [ + "ILX:0790407" + ] + }, + { + "feature": "ILX:0793619", + "name": "T4 sympathetic chain", + "proxies": [ + "ILX:0785536" + ] + }, + { + "feature": "ILX:0793335", + "name": "T5 sympathetic chain", + "proxies": [ + "ILX:0786912" + ] + }, + { + "feature": "ILX:0793336", + "name": "T6 sympathetic chain", + "proxies": [ + "ILX:0791060" + ] + }, + { + "feature": "UBERON:0035770", + "name": "inferior mesenteric nerve plexus", + "proxies": [ + "UBERON:0005453" + ] + }, + { + "feature": "UBERON:0007715", + "name": "thoracic subsegment of spinal cord", + "proxies": [ + "UBERON:0006468" + ] + }, + { + "feature": "UBERON:0007716", + "name": "lumbar subsegment of spinal cord", + "proxies": [ + "UBERON:0006448" + ] + }, + { + "feature": "UBERON:0011183", + "name": "corpus spongiosum of penis", + "proxies": [ + "UBERON:0001299" + ] + }, + { + "feature": "UBERON:0001780", + "name": "spinal nerve", + "proxies": [ + "ILX:0788282" + ] } ]