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I have multiome snRNA+snATAC data and the snRNA seq data were analyzed with scanpy.
How to integrate the snRNA seq data generated by scanpy with the snATAC seq data generated by ArchR ?
From the documents https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
How to generate the RangedSummarizedExperiment data set ? Is it possible to convert the anndata used by scanpy to RangedSummarizedExperiment data?
Thanks a lot
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Hello:
I have multiome snRNA+snATAC data and the snRNA seq data were analyzed with
scanpy.How to integrate the snRNA seq data generated by
scanpywith the snATAC seq data generated byArchR?From the documents https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
How to generate the
RangedSummarizedExperimentdata set ? Is it possible to convert theanndataused byscanpytoRangedSummarizedExperimentdata?Thanks a lot
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