Hello! First off, great theme thank you :).
So on my terminal (Tilix), there is this bar that is transparent on your theme, but not others. I am not sure how tell you "which color setting" that is as far as your theme's code goes. Please let me know if there's anything else I can provide.

Here it is with Adwaita. Also tried Arc, Qogir which I have previously used. All of them have this bar colored.

OS: Fedora release 30 (Thirty) x86_64
Kernel: 5.0.11-300.fc30.x86_64
Uptime: 5 hours, 17 mins
Packages: 2090 (rpm), 8 (snap)
Shell: zsh 5.7.1
Resolution: 2560x1080, 2560x1080, 2560x1080, 2560x1080
DE: GNOME 3.32.1
Theme: macterial [GTK2/3]
Icons: Papirus [GTK2/3]
Terminal: tilix
CPU: Intel i7-7700K (8) @ 4.500GHz
GPU: AMD ATI Radeon VII
Memory: 13048MiB / 31965MiB
Hello! First off, great theme thank you :).
So on my terminal (Tilix), there is this bar that is transparent on your theme, but not others. I am not sure how tell you "which color setting" that is as far as your theme's code goes. Please let me know if there's anything else I can provide.
Here it is with Adwaita. Also tried Arc, Qogir which I have previously used. All of them have this bar colored.