ctsem/NAMESPACE at master · cdriveraus/ctsem · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
# Generated by roxygen2: do not edit by hand

S3method("$",ctStanModel)
S3method("$<-",ctStanModel)
S3method(plot,ctKalmanDF)
S3method(plot,ctStanFit)
S3method(plot,ctStanModel)
S3method(print,summary.ctEmpiricalBayesFit)
S3method(print,summary.ctStanFit)
S3method(summary,ctEmpiricalBayesFit)
S3method(summary,ctStanFit)
export("ctModelMatrices<-")
export(ctACF)
export(ctACFresiduals)
export(ctAddSamples)
export(ctCheckFit)
export(ctChisqTest)
export(ctCollapse)
export(ctDeintervalise)
export(ctDiscretePars)
export(ctDiscreteParsPlot)
export(ctDiscretiseData)
export(ctDocs)
export(ctEmpiricalBayesFit)
export(ctExtract)
export(ctFit)
export(ctFitAddSamples)
export(ctFitCovCheck)
export(ctFitCovCheckPlot)
export(ctFitUpdate)
export(ctFitUpdateModel)
export(ctGenerate)
export(ctGenerateFromFit)
export(ctGenerateFromPriors)
export(ctIntervalise)
export(ctKalman)
export(ctKalmanArray)
export(ctLOO)
export(ctLongToWide)
export(ctModel)
export(ctModelConvertOMX)
export(ctModelCoverage_check)
export(ctModelHigherOrder)
export(ctModelLatex)
export(ctModelMatrices)
export(ctOptimUncertainty)
export(ctPlotArray)
export(ctPlotPosterior)
export(ctPoly)
export(ctPostPredData)
export(ctPostPredPlots)
export(ctPostPredict)
export(ctPredict)
export(ctPredictTIP)
export(ctRawParnames)
export(ctResiduals)
export(ctStanContinuousPars)
export(ctStanDiscretePars)
export(ctStanDiscreteParsPlot)
export(ctStanFit)
export(ctStanFitUpdate)
export(ctStanGenerate)
export(ctStanGenerateFromFit)
export(ctStanKalman)
export(ctStanModel)
export(ctStanParnames)
export(ctStanPlotPost)
export(ctStanPostPredict)
export(ctStanSubjectPars)
export(ctStanTIpredeffects)
export(ctStanUpdModel)
export(ctSubjectPars)
export(ctSummaryMatrices)
export(ctTIpredEffects)
export(ctWideNames)
export(ctWideToLong)
export(inv_logit)
export(log1p_exp)
export(plot.ctKalmanDF)
export(plotctACF)
export(sdpcor2cov)
export(stanWplot)
export(stan_reinitsf)
export(stan_unconstrainsamples)
export(standatact_specificsubjects)
export(test_isclose)
import(Rcpp)
import(data.table)
import(expm)
import(ggplot2)
import(grDevices)
import(graphics)
import(methods)
import(stats)
importFrom(Deriv,Simplify)
importFrom(Rcpp,cpp_object_initializer)
importFrom(Rcpp,evalCpp)
importFrom(RcppParallel,CxxFlags)
importFrom(RcppParallel,RcppParallelLibs)
importFrom(cOde,jacobianSymb)
importFrom(cOde,prodSymb)
importFrom(data.table,data.table)
importFrom(mize,mize)
importFrom(parallelly,makeClusterPSOCK)
importFrom(plyr,aaply)
importFrom(plyr,alply)
importFrom(plyr,round_any)
importFrom(rstan,As.mcmc.list)
importFrom(rstan,constrain_pars)
importFrom(rstan,get_num_upars)
importFrom(rstan,get_sampler_params)
importFrom(rstan,log_prob)
importFrom(rstan,monitor)
importFrom(rstan,sampling)
importFrom(rstan,stan_model)
importFrom(rstan,stanc)
importFrom(rstan,unconstrain_pars)
importFrom(rstantools,rstan_config)
importFrom(splines,bs)
importFrom(tibble,tibble)
importFrom(tools,texi2pdf)
importFrom(utils,as.relistable)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,relist)
importFrom(utils,tail)
useDynLib(ctsem, .registration = TRUE)