Let COTTAS query a condensed graph again #177

Workflow file for this run

	name: unit-tests

	on:
	push:
	branches:
	- "**"
	pull_request:

	env:
	FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
	# Pin pip instead of taking whatever released most recently. Every job used to
	# run `pip install --upgrade pip`, so each run resolved dependencies with a
	# different, unannounced resolver: CI was non-reproducible by construction,
	# and a pip release could break the build with no change in this repository.
	#
	# This does NOT prevent transient index failures, and should not be mistaken
	# for a fix for one. A case is on record: the pull_request run for PR #14
	# failed with `no matching distributions available for your environment:
	# mdurl` while the identical commit had passed 15 minutes earlier on push,
	# passed on two other platforms in that same run, and passed again on re-run
	# with no code change. mdurl is a pure-Python py3-none-any wheel, so nothing
	# about the environment made it uninstallable -- that was the index, not the
	# resolver. The right response there is a re-run. The right response to an
	# unpinned toolchain is this pin.
	#
	# Bump deliberately, as its own commit, so a resolver change lands where it
	# can be attributed instead of appearing inside an unrelated PR.
	PIP_VERSION: "26.2.1"

	jobs:
	wrapper-cross-platform:
	name: wrapper-unit (${{ matrix.os }})
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os:
	- ubuntu-latest
	- macos-latest
	- windows-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install the package and its declared dependencies
	# rdflib is a required runtime dependency (see pyproject.toml) and the
	# CLI imports it through the data-linking module while building its
	# argument parser, so even `--help` needs it. Installing the project
	# editable pulls exactly what pyproject declares and cannot drift from
	# it, while tests still run against the checkout.
	run: \|
	python -m pip install "pip==${{ env.PIP_VERSION }}"
	python -m pip install -e .

	- name: Run cross-platform wrapper tests (no real external tools)
	run: python -m unittest -v test.test_vcf_rdfizer_cross_platform_unit

	shell-posix:
	name: shell+pipeline-unit (${{ matrix.os }})
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os:
	- ubuntu-latest
	- ubuntu-22.04
	- macos-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install the package and its declared dependencies
	# rdflib is a required runtime dependency (see pyproject.toml) and the
	# CLI imports it through the data-linking module while building its
	# argument parser, so even `--help` needs it. Installing the project
	# editable pulls exactly what pyproject declares and cannot drift from
	# it, while tests still run against the checkout.
	run: \|
	python -m pip install "pip==${{ env.PIP_VERSION }}"
	python -m pip install -e .

	- name: Run full unit test suite
	run: python -m unittest discover -s test -p "test_*_unit.py" -v

	coverage:
	name: coverage-upload
	runs-on: ubuntu-latest
	needs:
	- wrapper-cross-platform
	- shell-posix
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Run coverage
	run: \|
	python -m pip install "pip==${{ env.PIP_VERSION }}" coverage
	python -m pip install -e .
	coverage run -m unittest discover -s test -p "test_*_unit.py"
	coverage xml -o coverage.xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v5
	with:
	files: ./coverage.xml
	flags: unittests
	name: vcf-rdfizer-unit-tests
	fail_ci_if_error: false

	package-smoke:
	name: package-smoke (${{ matrix.os }})
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os:
	- ubuntu-latest
	- macos-latest
	- windows-latest
	needs:
	- wrapper-cross-platform
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Build + install wheel
	run: \|
	python -m pip install "pip==${{ env.PIP_VERSION }}" build
	python -m build
	python -c "import glob,subprocess,sys; wheels=sorted(glob.glob('dist/*.whl')); wheels or (_ for _ in ()).throw(SystemExit('No wheel files found in dist/')); print(f'Installing wheel: {wheels[-1]}'); subprocess.check_call([sys.executable,'-m','pip','install',wheels[-1]])"
	python -m vcf_rdfizer --help

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Let COTTAS query a condensed graph again #177

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Let COTTAS query a condensed graph again #177

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