LevSeq_db/setup.py at main · fhalab/LevSeq_db · GitHub

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from setuptools import setup
import os
import re


def read_version():
    path = os.path.join(
        os.path.abspath(os.path.dirname(__file__)), "levseq_vis_dev/__init__.py"
    )
    with open(path, "r") as fh:
        return re.search(r'__version__\s?=\s?[\'"](.+)[\'"]', fh.read()).group(1)


def read_author():
    path = os.path.join(
        os.path.abspath(os.path.dirname(__file__)), "levseq_vis_dev/__init__.py"
    )
    with open(path, "r") as fh:
        return re.search(r'__author__\s?=\s?[\'"](.+)[\'"]', fh.read()).group(1)


def read_email():
    path = os.path.join(
        os.path.abspath(os.path.dirname(__file__)), "levseq_vis_dev/__init__.py"
    )
    with open(path, "r") as fh:
        return re.search(r'__author_email__\s?=\s?[\'"](.+)[\'"]', fh.read()).group(1)


def read_git():
    path = os.path.join(
        os.path.abspath(os.path.dirname(__file__)), "levseq_vis_dev/__init__.py"
    )
    with open(path, "r") as fh:
        return re.search(r'__url__\s?=\s?[\'"](.+)[\'"]', fh.read()).group(1)


def readme():
    with open("README.md") as f:
        return f.read()


setup(
    name="levseq_vis_dev",
    version=read_version(),
    description="",
    long_description=readme(),
    long_description_content_type="text/markdown",
    author=read_author(),
    author_email=read_email(),
    url=read_git(),
    license="GPL3",
    project_urls={
        "Bug Tracker": read_git(),
        "Documentation": read_git(),
        "Source Code": read_git(),
    },
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
        "Natural Language :: English",
        "Operating System :: OS Independent",
        "Programming Language :: Python :: 3.6",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    keywords=["Nanopore", "ONT", "evSeq", "LevSeq"],
    packages=["levseq_vis_dev"],
    include_package_data=True,
    package_data={},
    install_requires=[
        "matplotlib",
        "numpy",
        "pandas",
        "sciutil",
        "seaborn",
        "ninetysix",
        "scikit-learn",
        "statsmodels",
        "tqdm",
    ],
    python_requires=">=3.10",
    data_files=[("", ["LICENSE"])],
)