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---
layout: default
title: Open Source
navbar_title: Open Source
---

<h2 class="pt-4">Research Projects</h2>

<div class="my-3 p-0 bg-white shadow-sm rounded-xl">

    <!-- alabi -->
    <div class="p-4 border-bottom border-gray">
        <h5 class="mt-0 mb-1">
            <a href="https://github.com/jbirky/alabi" target="_blank">
                <i class="fab fa-github"></i> alabi
            </a>
        </h5>
        <p class="mb-2">
            <strong>Active Learning Accelerated Bayesian Inference (ALABI)</strong> &mdash;
            An open-source Python package for performing Bayesian inference with computationally expensive forward models using Gaussian processes and active learning.
        </p>
        <p class="mb-2">
            <a href="https://github.com/jbirky/alabi" target="_blank"><img src="https://img.shields.io/badge/GitHub-alabi-blue?logo=github" alt="GitHub"></a>
            <a href="https://alabi.readthedocs.io" target="_blank"><img src="https://img.shields.io/badge/docs-readthedocs-blue?logo=readthedocs" alt="Docs"></a>
        </p>
        <p class="small mb-0 text-muted">
            <span class="badge badge-secondary">Python</span>
            <span class="badge badge-secondary">Bayesian Inference</span>
            <span class="badge badge-secondary">Gaussian Processes</span>
            <span class="badge badge-secondary">MCMC</span>
            <span class="badge badge-secondary">Active Learning</span>
        </p>
    </div>

    <!-- spotgp -->
    <div class="p-4 border-bottom border-gray">
        <h5 class="mt-0 mb-1">
            <a href="https://github.com/jbirky/spotgp" target="_blank">
                <i class="fab fa-github"></i> spotgp
            </a>
        </h5>
        <p class="mb-2">
            Physically motivated Gaussian Process kernels for modeling stellar starspot variability, implemented in
            <code>JAX</code>.
        </p>
        <p class="mb-2">
            <a href="https://github.com/jbirky/spotgp" target="_blank"><img src="https://img.shields.io/badge/GitHub-spotgp-blue?logo=github" alt="GitHub"></a>
            <a href="https://spotgp.readthedocs.io" target="_blank"><img src="https://img.shields.io/badge/docs-readthedocs-blue?logo=readthedocs" alt="Docs"></a>
        </p>
        <p class="small mb-0 text-muted">
            <span class="badge badge-secondary">Python</span>
            <span class="badge badge-secondary">JAX</span>
            <span class="badge badge-secondary">Gaussian Processes</span>
            <span class="badge badge-secondary">Stellar Variability</span>
        </p>
    </div>

    <!-- vplanet_inference -->
    <div class="p-4">
        <h5 class="mt-0 mb-1">
            <a href="https://github.com/jbirky/vplanet_inference" target="_blank">
                <i class="fab fa-github"></i> vplanet_inference
            </a>
        </h5>
        <p class="mb-2">
            Python tools for doing statistical inference and model sensitivity analysis with
            <a href="https://github.com/VirtualPlanetaryLaboratory/vplanet" target="_blank">VPLanet</a>,
            a framework for simulating planetary system evolution.
        </p>
        <p class="mb-2">
            <a href="https://github.com/jbirky/vplanet_inference" target="_blank"><img src="https://img.shields.io/badge/GitHub-vplanet__inference-blue?logo=github" alt="GitHub"></a>
            <a href="https://vplanet-inference.readthedocs.io" target="_blank"><img src="https://img.shields.io/badge/docs-readthedocs-blue?logo=readthedocs" alt="Docs"></a>
        </p>
        <p class="small mb-0 text-muted">
            <span class="badge badge-secondary">Python</span>
            <span class="badge badge-secondary">VPLanet</span>
            <span class="badge badge-secondary">Planetary Evolution</span>
            <span class="badge badge-secondary">Bayesian Inference</span>
        </p>
    </div>

    <!-- apogee_tools -->
    <div class="p-4">
        <h5 class="mt-0 mb-1">
            <a href="https://github.com/jbirky/apogee_tools" target="_blank">
                <i class="fab fa-github"></i> apogee_tools
            </a>
        </h5>
        <p class="mb-2">
            Modeling tools for SDSS/APOGEE spectra. Provides utilities for downloading, processing,
            and fitting stellar spectra from the Apache Point Observatory Galactic Evolution Experiment (APOGEE).
        </p>
        <p class="mb-2">
            <a href="https://github.com/jbirky/apogee_tools" target="_blank"><img src="https://img.shields.io/badge/GitHub-apogee__tools-blue?logo=github" alt="GitHub"></a>
        </p>
        <p class="small mb-0 text-muted">
            <span class="badge badge-secondary">Python</span>
            <span class="badge badge-secondary">APOGEE</span>
            <span class="badge badge-secondary">Spectroscopy</span>
            <span class="badge badge-secondary">Stellar Models</span>
        </p>
    </div>

</div>

<h2 class="pt-4">Other Open Source Projects</h2>

<div class="my-3 p-0 bg-white shadow-sm rounded-xl">

    <!-- parallax-presentations -->
    <div class="p-4 border-bottom border-gray">
        <h5 class="mt-0 mb-1">
            <a href="https://github.com/jbirky/parallax-presentations" target="_blank">
                <i class="fab fa-github"></i> parallax-presentations
            </a>
        </h5>
        <p class="mb-2">
            A self-hostable presentation editor for building interactive slideshows with
            <a href="https://revealjs.com/" target="_blank">reveal.js</a>.
        </p>
        <p class="mb-2">
            <a href="https://github.com/jbirky/parallax-presentations" target="_blank"><img src="https://img.shields.io/badge/GitHub-revealjs__gui-blue?logo=github" alt="GitHub"></a>
        </p>
        <p class="small mb-0 text-muted">
            <span class="badge badge-secondary">JavaScript</span>
            <span class="badge badge-secondary">reveal.js</span>
            <span class="badge badge-secondary">WYSIWYG Editor</span>
            <span class="badge badge-secondary">Presentations</span>
        </p>
    </div>

    <!-- tikz_editor -->
    <div class="p-4">
        <h5 class="mt-0 mb-1">
            <a href="https://github.com/jbirky/tikz_editor" target="_blank">
                <i class="fab fa-github"></i> tikz_editor
            </a>
        </h5>
        <p class="mb-2">
            A graphical interface for creating and editing LaTeX TikZ diagrams. Try it out here! <a href="https://jessicabirky.com/tikz_editor/" target="_blank"></a>https://jessicabirky.com/tikz_editor/</a>
        </p>
        <p class="mb-2">
            <a href="https://github.com/jbirky/tikz_editor" target="_blank"><img src="https://img.shields.io/badge/GitHub-tikz__editor-blue?logo=github" alt="GitHub"></a>
        </p>
        <p class="small mb-0 text-muted">
            <span class="badge badge-secondary">HTML</span>
            <span class="badge badge-secondary">LaTeX</span>
            <span class="badge badge-secondary">TikZ</span>
        </p>
    </div>

</div>