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README.md

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# scMuscle
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## The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze, and provide to the research community skeletal muscle transcriptomic data.
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![Figure1](./high_res_figures/Fig1_scMuscle.png)
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We used more than 100 single-cell and single-nucleus RNA sequencing datasets, from 14 different research groups, to build an integrated transcriptomic reference of murine skeletal muscle.
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The resulting compendium has ~365,000 cell/nucleus, which we have annotated using a suite of existing software tools (see linked preprint for more details).

high_res_figures/Fig1_scMuscle.png

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high_res_figures/Fig2_myo.png

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high_res_figures/Fig4_visium.png

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high_res_figures/Fig5_cellchat.png

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high_res_figures/SupFig1_SeqQC.png

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high_res_figures/SupFig2_UMAPs.png

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high_res_figures/SupFig3_Dots.png

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