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@nanoporetech

Oxford Nanopore Technologies

Direct DNA/RNA analysis for anyone, anywhere.

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 765 101

  2. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 488 87

  3. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 168 32

  4. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 428 133

  5. modkit modkit Public

    A bioinformatics tool for working with modified bases

    Rust 233 21

  6. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 184 28

Repositories

Showing 10 of 91 repositories
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 11 6 2 2 Updated Dec 8, 2025
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 488 87 27 3 Updated Dec 8, 2025
  • pyspoa Public

    Python bindings to spoa

    nanoporetech/pyspoa’s past year of commit activity
    Python 21 3 3 0 Updated Dec 3, 2025
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 233 21 246 1 Updated Nov 30, 2025
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 765 101 86 (1 issue needs help) 2 Updated Nov 21, 2025
  • ont-output-specifications Public

    Specifications for output files from MinKNOW, dorado and others

    nanoporetech/ont-output-specifications’s past year of commit activity
    Python 5 0 0 0 Updated Nov 21, 2025
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 168 32 46 3 Updated Nov 19, 2025
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    nanoporetech/bonito’s past year of commit activity
    Python 428 133 3 2 Updated Nov 16, 2025
  • pomfret Public
    nanoporetech/pomfret’s past year of commit activity
    C 25 1 2 0 Updated Nov 14, 2025
  • minknow_api Public

    Protobuf and gRPC specifications for the MinKNOW API

    nanoporetech/minknow_api’s past year of commit activity
    Python 66 13 37 2 Updated Oct 29, 2025
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