I've been trying to worth through the nf-core tutorial of running into an issue with the
nextflow run nf-core/demo -profile conda,test --outdir demo-results-notrim --skip_trim -resume
However I get the error
ERROR ~ Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The following invalid input values have been detected:
- --skip_trim (true): Value is [string] but should be [boolean]
I then made a json file nano params.json with
{ "skip_trim": true, "outdir": "demo-results-notrim" }
I also needed to use conda
nextflow run nf-core/demo -profile conda,test --outdir demo-results-notrim --skip_trim -resume
So I'm not 100% sure why it kept saying it was. a string even though I wrote it as --skip_trim true or =true or 'true' didn't work, but the JSON did
I've been trying to worth through the nf-core tutorial of running into an issue with the
nextflow run nf-core/demo -profile conda,test --outdir demo-results-notrim --skip_trim -resume
However I get the error
ERROR ~ Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The following invalid input values have been detected:
I then made a json file nano params.json with
{ "skip_trim": true, "outdir": "demo-results-notrim" }I also needed to use conda
nextflow run nf-core/demo -profile conda,test --outdir demo-results-notrim --skip_trim -resume
So I'm not 100% sure why it kept saying it was. a string even though I wrote it as --skip_trim true or =true or 'true' didn't work, but the JSON did