Skip to content

nf-core demo (local) #954

Description

@KerryAM-R

I've been trying to worth through the nf-core tutorial of running into an issue with the

nextflow run nf-core/demo -profile conda,test --outdir demo-results-notrim --skip_trim -resume

However I get the error

ERROR ~ Validation of pipeline parameters failed!

-- Check '.nextflow.log' file for details
The following invalid input values have been detected:

  • --skip_trim (true): Value is [string] but should be [boolean]

I then made a json file nano params.json with

{ "skip_trim": true, "outdir": "demo-results-notrim" }

I also needed to use conda

nextflow run nf-core/demo -profile conda,test --outdir demo-results-notrim --skip_trim -resume

So I'm not 100% sure why it kept saying it was. a string even though I wrote it as --skip_trim true or =true or 'true' didn't work, but the JSON did

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions