diff --git a/CHANGELOG.md b/CHANGELOG.md index 915fa221..9d7c7e1d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,5 @@ +- V 2.2.2.0: + - Forged packages now contain a new column `SourcePackage`, which records which original package (and version) a sample originally came from. - V 2.2.1.0: - Made the display of description and source url in the explorer page of the of the server's html API indendent of each other. - Made the source column hide when the necessary URL is missing on the archive page. diff --git a/poseidon-hs.cabal b/poseidon-hs.cabal index ed185b9b..4fba4b31 100644 --- a/poseidon-hs.cabal +++ b/poseidon-hs.cabal @@ -13,7 +13,7 @@ extra-source-files: README.md, CHANGELOG.md library - exposed-modules: + exposed-modules: -- core Poseidon.Core.Package, Poseidon.Core.GenotypeData, Poseidon.Core.BibFile, Poseidon.Core.Janno, Poseidon.Core.ColumnTypesJanno, Poseidon.Core.ColumnTypesSSF, @@ -54,7 +54,7 @@ executable trident filepath, co-log other-modules: Paths_poseidon_hs default-language: Haskell2010 - + executable poseidon-server main-is: Main-server.hs hs-source-dirs: src-executables @@ -76,7 +76,7 @@ Test-Suite poseidon-tools-tests filepath, pipes, pipes-safe, pipes-ordered-zip, unordered-containers, cassava, containers, process, country, optparse-applicative, parsec - other-modules: + other-modules: -- golden PoseidonGoldenTests.GoldenTestsValidateChecksumsSpec, PoseidonGoldenTests.GoldenTestsRunCommands, diff --git a/src/Poseidon/CLI/Trident/Forge.hs b/src/Poseidon/CLI/Trident/Forge.hs index d7551353..31684ee5 100644 --- a/src/Poseidon/CLI/Trident/Forge.hs +++ b/src/Poseidon/CLI/Trident/Forge.hs @@ -4,10 +4,13 @@ module Poseidon.CLI.Trident.Forge where import Poseidon.Core.BibFile (BibEntry (..), BibTeX, writeBibTeXFile) -import Poseidon.Core.ColumnTypesJanno (PoseidonID (..)) -import Poseidon.Core.ColumnTypesUtils (ListColumn (..), +import Poseidon.Core.ColumnTypesJanno (JannoNrSNPs (..), + PoseidonID (..)) +import Poseidon.Core.ColumnTypesUtils (CsvNamedRecord (..), + ListColumn (..), getCsvNR, getMaybeListColumn) import Poseidon.Core.EntityTypes (EntityInput, + IndividualInfo (..), PacNameAndVersion (..), PoseidonEntity (..), SignedEntity (..), @@ -15,6 +18,7 @@ import Poseidon.Core.EntityTypes (EntityInput, isLatestInCollection, makePacNameAndVersion, readEntityInputs, + renderNameWithVersion, resolveUniqueEntityIndices) import Poseidon.Core.GenotypeData (GenoDataSource (..), GenotypeDataSpec (..), @@ -53,6 +57,8 @@ import Control.Exception (catch, throwIO) import Control.Monad (filterM, forM, forM_, unless, when) import qualified Data.ByteString as B +import qualified Data.ByteString.Char8 as BC +import qualified Data.HashMap.Strict as HM import Data.List (intercalate, nub) import Data.Maybe (catMaybes, mapMaybe) import Data.Time (getCurrentTime) @@ -62,7 +68,6 @@ import qualified Data.Vector.Unboxed.Mutable as VUM import Pipes (MonadIO (liftIO), cat, (>->)) import qualified Pipes.Prelude as P import Pipes.Safe (SafeT, runSafeT) -import Poseidon.Core.ColumnTypesJanno (JannoNrSNPs (..)) import SequenceFormats.Eigenstrat (EigenstratSnpEntry (..), GenoEntry (..), GenoLine, writeEigenstrat) @@ -170,7 +175,16 @@ runForge ( -- collect data -- -- janno let (JannoRows jannoRows) = getJointJanno relevantPackages - newJanno@(JannoRows relevantJannoRows) = JannoRows $ map (jannoRows !!) relevantIndices + newJanno@(JannoRows relevantJannoRows) = JannoRows $ do --list monad + i <- relevantIndices + let sourcePac = indInfoPac $ fst indInfoCollection !! i + let jannoRow = jannoRows !! i + let addColsHM = getCsvNR . jAdditionalColumns $ jannoRow + let newTraceEntry = case HM.lookup "SourcePackage" addColsHM of + Just ft -> ft <> ";" <> BC.pack (renderNameWithVersion sourcePac) + Nothing -> BC.pack $ renderNameWithVersion sourcePac + let addColsHMwithTrace = HM.insert "SourcePackage" newTraceEntry addColsHM + return $ jannoRow {jAdditionalColumns = CsvNamedRecord addColsHMwithTrace} -- seqSource let seqSourceRows = mconcat $ map posPacSeqSource relevantPackages diff --git a/src/Poseidon/Core/ColumnTypesUtils.hs b/src/Poseidon/Core/ColumnTypesUtils.hs index fb087e2b..662c0861 100644 --- a/src/Poseidon/Core/ColumnTypesUtils.hs +++ b/src/Poseidon/Core/ColumnTypesUtils.hs @@ -186,4 +186,3 @@ renderCsvParseError (CsvParseError expected actual leftover) = "expected data type: " ++ expected ++ ", " ++ "broken value: " ++ actual ++ ", " ++ "problematic characters: " ++ show leftover ++ ")" - diff --git a/test/PoseidonGoldenTests/GoldenTestCheckSumFile.txt b/test/PoseidonGoldenTests/GoldenTestCheckSumFile.txt index e43036b7..cfb36923 100644 --- a/test/PoseidonGoldenTests/GoldenTestCheckSumFile.txt +++ b/test/PoseidonGoldenTests/GoldenTestCheckSumFile.txt @@ -69,12 +69,12 @@ ebf0b456d5e09686ee7131db06848104 rectify init/Schiffels/POSEIDON.yml 083fe7ef4206c979356a3a2454d780b1 rectify init/Schiffels/Schiffels.janno 5b5c20071f3e53346fdfa04f9dbb0223 forge forge/ForgePac1/POSEIDON.yml 1286a2580e4bfbed7d804d5f3fe125f7 forge forge/ForgePac1/ForgePac1.geno -848cf0fab32e4078a88cc17ad8ec3381 forge forge/ForgePac1/ForgePac1.janno +29301e7d9cc37b2a5f889c244b691d17 forge forge/ForgePac1/ForgePac1.janno a1daaa1ebc9c93405acb4a0f24ffa355 forge forge/ForgePac1/ForgePac1.ssf b4f71aff4fbc11594008c3811781cc43 forge forge/ForgePac1/ForgePac1.bib d860abe4b07926c1114a52cee70e8b0d forge forge/ForgePac1_vcf/POSEIDON.yml 9e0c33410f399caf99446f01a7ed7809 forge forge/ForgePac1_vcf/ForgePac1_vcf.geno -848cf0fab32e4078a88cc17ad8ec3381 forge forge/ForgePac1_vcf/ForgePac1_vcf.janno +29301e7d9cc37b2a5f889c244b691d17 forge forge/ForgePac1_vcf/ForgePac1_vcf.janno a1daaa1ebc9c93405acb4a0f24ffa355 forge forge/ForgePac1_vcf/ForgePac1_vcf.ssf b4f71aff4fbc11594008c3811781cc43 forge forge/ForgePac1_vcf/ForgePac1_vcf.bib cbd8d1e4e4d6f6b5e65cc1f8fa33cccb forge forge/ForgePac2/POSEIDON.yml @@ -83,17 +83,17 @@ cbd8d1e4e4d6f6b5e65cc1f8fa33cccb forge forge/ForgePac2/POSEIDON.yml 7bd06bf634e6c29815a74532f696d753 forge forge/ForgePac3/ForgePac3.geno d817ecc64d504e1351d85996903f09b2 forge forge/ForgePac3/ForgePac3.snp ad8add34e464ee620bb392c00636e7f2 forge forge/ForgePac3/ForgePac3.ind -3163a6c626e7c4a55162a33601cd344a forge forge/ForgePac3/ForgePac3.janno +ce3d441d5a4928e8c9a38caa76389fde forge forge/ForgePac3/ForgePac3.janno a534f60c502a792f5c8404a9fc3054b9 forge forge/ForgePac3/ForgePac3.ssf 1f8edbb1cf8ad7306fb3c16ce692b560 forge forge/ForgePac4/POSEIDON.yml f348944d864cbaa595f138b11d154248 forge forge/ForgePac4/ForgePac4.bim 217cbb31258a3a7c9522d8dc9bda2386 forge forge/ForgePac4/ForgePac4.bed 3001829ad782e27375a6132583c16f05 forge forge/ForgePac4/ForgePac4.fam -6bdd8baf96d8f1437f1b35bbec9654a1 forge forge/ForgePac4/ForgePac4.janno +dedbb0e02eb0182346c29ee4bb51f8e6 forge forge/ForgePac4/ForgePac4.janno 103c6305eaa79811cff5b51aa401c465 forge forge/ForgePac4/ForgePac4.ssf 970ee8383d391056973c0dffd460fd27 forge forge/ForgePac5/POSEIDON.yml 5a3783db28cf9da6356b3c6105564be5 forge forge/ForgePac5/ForgePac5.geno -fe8ab20f55cf750f1249b9598f40df0a forge forge/ForgePac5/ForgePac5.janno +668da542fc043b2ee7d2647d0972562c forge forge/ForgePac5/ForgePac5.janno 1327f2ba8c436fd1050813a082f6af44 forge forge/ForgePac5/ForgePac5.ssf 1286a2580e4bfbed7d804d5f3fe125f7 forge forge/ForgePac6/ForgePac6.geno 6e3ecc6695234ba1e71045278634d06b forge forge/ForgePac6/ForgePac6.snp @@ -101,26 +101,26 @@ fe8ab20f55cf750f1249b9598f40df0a forge forge/ForgePac5/ForgePac5.janno 1286a2580e4bfbed7d804d5f3fe125f7 forge forge/ForgePac7/ForgePac7.geno 6e3ecc6695234ba1e71045278634d06b forge forge/ForgePac7/ForgePac7.snp 2bd17be137df5cb11830b09b833b937d forge forge/ForgePac7/ForgePac7.ind -d480376e41da91f056779969ba2ca6c8 forge forge/ForgePac7/ForgePac7.janno -5d3ed7862824c9b3860412ec895af182 forge forge/ForgePac8/ForgePac8.janno +645bfe63c413f95f1c4604a8368ca3c9 forge forge/ForgePac7/ForgePac7.janno +f297ff0b018c1ceb44661601fdde9a9d forge forge/ForgePac8/ForgePac8.janno 24882e62b96340abc4e74b354d3b67e0 forge forge/ForgePac8/ForgePac8.ssf 84bac408ab864c357bb2a6e1db5cda20 forge forge/ForgePac9/ForgePac9.geno -c900c31ba87ded89b5d57eff2c543993 forge forge/ForgePac9/ForgePac9.janno +073169cdbb2093980fd88fbbcc3cf8dd forge forge/ForgePac9/ForgePac9.janno 487220b6fff6349c1d274945b26ecd8e forge forge/ForgePac9/ForgePac9.ssf bcccc5136aade390f711fee3695ef62b forge forge/ForgePac10/ForgePac10.geno -318fb50802161edca4c63d882a1e0731 forge forge/ForgePac10/ForgePac10.janno +08aead8dddc3e4a91ec035dadd908a28 forge forge/ForgePac10/ForgePac10.janno a62c05bb53e72309fc5062a3ea701c5a forge forge/ForgePac10/ForgePac10.ssf bdef2c307caa92ee7a3e946d0264171a forge forge/ForgePac10/ForgePac10.bib 0332344057c0c4dce2ff7176f8e1103d forge forge/ForgePac11/ForgePac11.geno -d134f76c49bb7385e0493244d2900a4e forge forge/ForgePac11/ForgePac11.janno +cd580b0b9be93017415d31f88f693e10 forge forge/ForgePac11/ForgePac11.janno a62c05bb53e72309fc5062a3ea701c5a forge forge/ForgePac11/ForgePac11.ssf 0bb988d9e1c981a47f332bea8a16e984 forge forge/ForgePac12/ForgePac12.ind -35a717d522094e1feba7468590608b2f forge forge/ForgePac13/ForgePac13.janno -7ec893f4dde2f136d66b5e3f2ee6aca9 forge forge/ForgePac14/ForgePac14.janno -b7b2f1ad925f7e1e66e2a8040d5985fb forge forge/ForgePac15/ForgePac15.janno -b7b2f1ad925f7e1e66e2a8040d5985fb forge forge/ForgePac16/ForgePac16.janno -b17d37da626be3a61212447692899a19 forge forge/ForgePac17/ForgePac17.janno -d6f09712aed72a3662cddedc4b9d9c11 forge forge/ForgePac18/ForgePac18.janno +b312f55762d710d6357b8d4b6326f4bb forge forge/ForgePac13/ForgePac13.janno +37815bf48c845e27f924a45df5cebed9 forge forge/ForgePac14/ForgePac14.janno +c06f2fd3672ec2f997c0bb0591d678a1 forge forge/ForgePac15/ForgePac15.janno +c06f2fd3672ec2f997c0bb0591d678a1 forge forge/ForgePac16/ForgePac16.janno +3c037bb39bbb01a5e46861bccea772a7 forge forge/ForgePac17/ForgePac17.janno +e7dd731e1e73debe7fd6f4ca99185793 forge forge/ForgePac18/ForgePac18.janno 3fc77f5a5b83ac4fc7b082c9b3ee4ba1 forge forge/ForgePac18/ForgePac18.fam 842885ffe256819b264991384020c2ac forge forge/ForgePac18/ForgePac18.bed 6644be1a1c8967753b4903ce22228dbf forge forge/ForgePac19/POSEIDON.yml @@ -133,10 +133,10 @@ ad7e56177aad0a720f0bde13d47f2ac1 forge forge/ForgePac19/CHANGELOG.md 9b22cab26cdae87bd79d24c289e48433 forge forge/ForgePac19/ForgePac19.fam 504775c8994e25615b7662fc0495ff12 forge forge/ForgePac19/ForgePac19.janno 3288b6ff2d7b02eec0f34a8434e4b7e3 forge forge/ForgePac20/POSEIDON.yml -589e62622e1ee6f0ad6268935dd540ba forge forge/ForgePac20/ForgePac20.janno +2957d88d1fc24e4de8100c5ee4cb5806 forge forge/ForgePac20/ForgePac20.janno ef1646043331ed9d67e4072ee46eb9f4 forge forge/ForgePac21/POSEIDON.yml 8b8e1852b1e3cdd0ab0176dddce13bba forge forge/ForgePac21/ForgePac21.vcf -848cf0fab32e4078a88cc17ad8ec3381 forge forge/ForgePac21/ForgePac21.janno +29301e7d9cc37b2a5f889c244b691d17 forge forge/ForgePac21/ForgePac21.janno a1daaa1ebc9c93405acb4a0f24ffa355 forge forge/ForgePac21/ForgePac21.ssf b4f71aff4fbc11594008c3811781cc43 forge forge/ForgePac21/ForgePac21.bib d4a05cfef045648238a94a9d621cf667 chronicle chronicle/chronicle1.yml diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1/ForgePac1.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1/ForgePac1.janno index 71191120..f2845189 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1/ForgePac1.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1/ForgePac1.janno @@ -1,7 +1,7 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a -SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a Wang_2020-0.1.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac10/ForgePac10.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac10/ForgePac10.janno index 65bdfe49..6ca9e745 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac10/ForgePac10.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac10/ForgePac10.janno @@ -1,11 +1,11 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Schmid_2028-1.0.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac11/ForgePac11.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac11/ForgePac11.janno index 0a94bcde..b6b218bb 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac11/ForgePac11.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac11/ForgePac11.janno @@ -1,11 +1,11 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac12/ForgePac12.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac12/ForgePac12.janno index 21aa9dc8..7a3de485 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac12/ForgePac12.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac12/ForgePac12.janno @@ -1,11 +1,11 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords -XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX099 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords SourcePackage +XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX099 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac13/ForgePac13.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac13/ForgePac13.janno index 556b4693..8fff0c5a 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac13/ForgePac13.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac13/ForgePac13.janno @@ -1,21 +1,21 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 AddCol3 -XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX020 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 n/a -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 n/a -XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 n/a -XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 n/a -XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 n/a -XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 AddCol3 SourcePackage +XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX020 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 +XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac14/ForgePac14.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac14/ForgePac14.janno index cad0ce4f..bc693876 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac14/ForgePac14.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac14/ForgePac14.janno @@ -1,3 +1,3 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol2 AddCol3 -XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a n/a -XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol2 AddCol3 SourcePackage +XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a n/a Lamnidis_2018-1.0.0 +XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 Lamnidis_2018-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac15/ForgePac15.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac15/ForgePac15.janno index 21aa9dc8..7a3de485 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac15/ForgePac15.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac15/ForgePac15.janno @@ -1,11 +1,11 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords -XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX099 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords SourcePackage +XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX099 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac16/ForgePac16.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac16/ForgePac16.janno index 21aa9dc8..7a3de485 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac16/ForgePac16.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac16/ForgePac16.janno @@ -1,11 +1,11 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords -XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a -XXX099 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords SourcePackage +XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX012 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX014 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX015 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX016 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX017 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX018 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 +XXX099 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a Lamnidis_2018-1.0.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac17/ForgePac17.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac17/ForgePac17.janno index eb9abd49..8d7eeb96 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac17/ForgePac17.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac17/ForgePac17.janno @@ -1,5 +1,5 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol2 AddCol3 -XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 -XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 -XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 -XXX020 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol2 AddCol3 SourcePackage +XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX013 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 8 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX019 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX020 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a v2 v3 Lamnidis_2018-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac18/ForgePac18.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac18/ForgePac18.janno index 69ab2016..677a76d5 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac18/ForgePac18.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac18/ForgePac18.janno @@ -1,6 +1,6 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1_vcf/ForgePac1_vcf.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1_vcf/ForgePac1_vcf.janno index 71191120..f2845189 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1_vcf/ForgePac1_vcf.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac1_vcf/ForgePac1_vcf.janno @@ -1,7 +1,7 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a -SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a Wang_2020-0.1.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac20/ForgePac20.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac20/ForgePac20.janno index 8849f1c3..af4c066a 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac20/ForgePac20.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac20/ForgePac20.janno @@ -1,3 +1,3 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords 起司蛋糕 -XXX001 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a testà n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 鑽頭 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a MAMS-47224 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 香腸沙拉 +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords SourcePackage 起司蛋糕 +XXX001 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a testà n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Schmid_2028-1.0.0 鑽頭 +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a MAMS-47224 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Schmid_2028-1.0.0 香腸沙拉 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac21/ForgePac21.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac21/ForgePac21.janno index 71191120..f2845189 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac21/ForgePac21.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac21/ForgePac21.janno @@ -1,7 +1,7 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a -SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a Wang_2020-0.1.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac3/ForgePac3.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac3/ForgePac3.janno index d0434e0e..7ab0fb30 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac3/ForgePac3.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac3/ForgePac3.janno @@ -1,4 +1,4 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac4/ForgePac4.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac4/ForgePac4.janno index d7a29992..28b63f7f 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac4/ForgePac4.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac4/ForgePac4.janno @@ -1,5 +1,5 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a Wang_2020-0.1.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac5/ForgePac5.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac5/ForgePac5.janno index 810229b0..36f6b884 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac5/ForgePac5.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac5/ForgePac5.janno @@ -1,16 +1,16 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -SAMPLE0 F 1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a -SAMPLE1 M 2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a TestPaper1 n/a n/a n/a n/a -SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a -SAMPLE3 M 4 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestBook2 n/a n/a n/a n/a -SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX008 F POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX010 M POP3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +SAMPLE0 F 1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE1 M 2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a TestPaper1 n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1 n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE3 M 4 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestBook2 n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Wang2020;TestPaper1;TestBook2 n/a n/a n/a n/a Wang_2020-0.1.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac7/ForgePac7.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac7/ForgePac7.janno index 26e0fa61..bdbf6425 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac7/ForgePac7.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac7/ForgePac7.janno @@ -1,7 +1,7 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note Chromosomal_Anomalies Chromosomal_Anomalies_Note MT_Haplogroup Y_Haplogroup Source_Material Source_Material_Note Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 -SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a -SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note Chromosomal_Anomalies Chromosomal_Anomalies_Note MT_Haplogroup Y_Haplogroup Source_Material Source_Material_Note Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX002 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX004 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX005 M POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX006 F POP2 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +SAMPLE2 F 3 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Wang_2020-0.1.0 +SAMPLE4 F 5 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Wang_2020-0.1.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac8/ForgePac8.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac8/ForgePac8.janno index c3e77105..aa50f0f0 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac8/ForgePac8.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac8/ForgePac8.janno @@ -1,3 +1,3 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 AddCol3 -XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 -XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 AddCol3 SourcePackage +XXX011 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 10 n/a n/a n/a n/a n/a n/a n/a Lamnidis2018 n/a n/a n/a v2 v3 Lamnidis_2018-1.0.1 +XXX001 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 n/a Schiffels_2016-1.0.1 diff --git a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac9/ForgePac9.janno b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac9/ForgePac9.janno index 9caa8d16..349826bc 100644 --- a/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac9/ForgePac9.janno +++ b/test/PoseidonGoldenTests/GoldenTestData/forge/ForgePac9/ForgePac9.janno @@ -1,5 +1,5 @@ -Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 -XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 -XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 -XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 -XXX001 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a +Poseidon_ID Genetic_Sex Group_Name Individual_ID Species Alternative_IDs Alternative_IDs_Context Relation_To Relation_Degree Relation_Type Collection_ID Custodian_Institution Cultural_Era Cultural_Era_URL Archaeological_Culture Archaeological_Culture_URL Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Chromosomal_Anomalies MT_Haplogroup Y_Haplogroup Source_Material Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords AddCol1 AddCol2 SourcePackage +XXX003 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 7 n/a n/a n/a n/a n/a n/a n/a Schiffels2016 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX007 M POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX009 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a Schiffels2016;TestPaper1;TestBook1 n/a n/a v1 v2 Schiffels_2016-1.0.1 +XXX001 F POP1 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 9 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Schmid_2028-1.0.0 diff --git a/test/PoseidonGoldenTests/GoldenTestData/genoconvert/out_vcf/Schiffels_2016.vcf.gz b/test/PoseidonGoldenTests/GoldenTestData/genoconvert/out_vcf/Schiffels_2016.vcf.gz index 4d23fd67..8baafd44 100644 Binary files a/test/PoseidonGoldenTests/GoldenTestData/genoconvert/out_vcf/Schiffels_2016.vcf.gz and b/test/PoseidonGoldenTests/GoldenTestData/genoconvert/out_vcf/Schiffels_2016.vcf.gz differ