Dockerfile

FROM condaforge/mambaforge
MAINTAINER Simon Roux sroux@lbl.gov
ADD VERSION .
## Setup the environment needed
COPY iphop_environment.yml /tmp/iphop_environment.yml
RUN mamba create -n iphop iphop=1.3.0 -c conda-forge -c bioconda -c biocore -c anaconda -y --no-channel-priority --override-channels \
      && echo "conda activate iphop" >> ~/.bashrc
SHELL ["/bin/bash", "--login", "-c"]
## Finally, install a few more libraries which apparently don't come natively with this image (Note: this is for WIsH)
RUN apt-get update && apt-get install -y --no-install-recommends apt-utils && apt-get -y install curl
## Point to the executable
# ENTRYPOINT ["conda", "run", "-n", "iphop"]
ENTRYPOINT ["conda", "run", "-n", "iphop", "iphop"]