lcls-python3-envs/python3_rhel7_env.yml at main · slaclab/lcls-python3-envs · GitHub

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name: python3_rhel7_env
channels:
  - conda-forge
dependencies:
  - alembic
  - bayesian-optimization
  - black
  - blosc
  - bmad
  - bokeh
  - botorch
  - caproto
  - cx_oracle
  - cython
  - dask
  - dateparser
  - deap
  - dm-tree
  - epics-base
  - epicscorelibs
  - flake8
  - google-api-python-client
  - google-auth-httplib2
  - google-auth-oauthlib
  - greenlet
  - h5py
  - hdf5
  - holoviews
  - imageio
  - img2pdf
  - impact-t
  - ipython
  - ipywidgets
  - jinja2
  - jupyter
  - jupyterlab
  - kafka-python
  - keras
  - lightning
  - lume-impact
  - lume-model
  - matplotlib
  - mkdocs
  - mkdocstrings
  - mkdocs-material
  - mkdocs-jupyter
  - mlflow>=2.22.0
  - mock
  - mpi
  - mpi4py
  - multiset
  - notebook
  - numexpr
  - numpy
  - oct2py
  - octave
  - openmpi
  - openpmd-beamphysics
  - openpyxl
  - pandas
  - panel
  - pcaspy
  - pip
  - pint
  - prefect
  - pyarrow
  - pyca
  - pydantic
  - pydm
  - pyepics
  - pynput
  - pyqt
  - pyqtgraph
  - pyqtwebengine
  - pyside6
  - pytao
  - pytest
  - pytest-benchmark
  - pytest-cov
  - pytest-qt
  - python=3.12
  - python-confluent-kafka
  - python-mss
  - python-vxi11
  - pytorch=2.7.1
  - pytz
  - pyzmq
  - qtawesome
  - qtpy
  - requests
  - scikit-learn
  - scikit-image
  - scipy
  - seaborn
  - six
  - sqlite
  - sqlalchemy
  - tenacity
  - pytables
  - tensorboard
  - treelib
  - urllib3
  - xopt
  - pip:
    - cheetah-accelerator
    - cothread  # Version on conda-forge no longer updated past python 3.10
    - gymnasium
    - ipaddress
    - matlab-wrapper
    - opencv-contrib-python
    - p4p
    - slac-alarm-manager
    - git+https://github.com/xopt-org/Badger
    - git+https://github.com/slaclab/edef
    - git+https://github.com/slaclab/edlgenerator
    - git+https://github.com/slaclab/edmbutton
    - git+https://github.com/dylanmkennedy/emitopt
    - git+https://github.com/slaclab/lcls-live
    - git+https://github.com/slaclab/lcls-tools.git
    - git+https://github.com/slaclab/lume-epics.git
    - git+https://github.com/slaclab/ml-tto
    - git+https://github.com/slaclab/mps_database
    - git+https://github.com/slaclab/mps_history
    - git+https://github.com/slaclab/PyEmittance
    - git+https://github.com/slaclab/py-tlib-core.git
    - git+https://github.com/slaclab/py-tlib-db.git
    - git+https://github.com/slaclab/py-tlib-widgets.git
    #- git+https://github.com/slaclab/slac-db # Let something else install slac-db to avoid conflicting versions error
    #- git+https://github.com/slaclab/slac-devices  # Is pulled by slac-measurements, will also have conflicting versions error if both are included
    - git+https://github.com/slaclab/slac-measurements
    #- git+https://github.com/slaclab/slac-timing # Is pulled by slac-measurements, will also have conflicting versions error if both are included
    #- git+https://github.com/slaclab/slac-tools  # No actual code here yet so leads to a "neither setup.py nor pyproject.toml found" error if included
    - git+https://github.com/slaclab/slacepics
    - git+https://github.com/slaclab/subprocessca
    - git+https://github.com/slaclab/ScPatternSelect.git

#
# Stuff that isn't on PyPI, conda-forge, or GitHub that is manually installed in prod
# epics-batch-get
# gauge-widget
# lcls-parameters
# logicgate
# matlog
# meme
# model
# physicselog
# wmctrl