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<!DOCTYPE html>
<html lang="en" data-content_root="./">
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<title>Index — Thetis 2026.10.post0 documentation</title>
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<li class="page_item"><a href="documentation.html" title="Thetis documentation">Documentation</a></li>
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<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
<a href="#A"><strong>A</strong></a>
| <a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#F"><strong>F</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#H"><strong>H</strong></a>
| <a href="#I"><strong>I</strong></a>
| <a href="#J"><strong>J</strong></a>
| <a href="#K"><strong>K</strong></a>
| <a href="#L"><strong>L</strong></a>
| <a href="#M"><strong>M</strong></a>
| <a href="#N"><strong>N</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#Q"><strong>Q</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#U"><strong>U</strong></a>
| <a href="#V"><strong>V</strong></a>
| <a href="#W"><strong>W</strong></a>
</div>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.rungekutta.AbstractRKScheme.a">a (thetis.rungekutta.AbstractRKScheme property)</a>
<ul>
<li><a href="thetis.html#thetis.rungekutta.BackwardEulerAbstract.a">(thetis.rungekutta.BackwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.CrankNicolsonAbstract.a">(thetis.rungekutta.CrankNicolsonAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK22Abstract.a">(thetis.rungekutta.DIRK22Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK23Abstract.a">(thetis.rungekutta.DIRK23Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract.a">(thetis.rungekutta.DIRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK43Abstract.a">(thetis.rungekutta.DIRK43Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLPUM2Abstract.a">(thetis.rungekutta.DIRKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLSPUM2Abstract.a">(thetis.rungekutta.DIRKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLPUM2Abstract.a">(thetis.rungekutta.ERKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLSPUM2Abstract.a">(thetis.rungekutta.ERKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKMidpointAbstract.a">(thetis.rungekutta.ERKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKMidpointAbstract.a">(thetis.rungekutta.ESDIRKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKTrapezoidAbstract.a">(thetis.rungekutta.ESDIRKTrapezoidAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ForwardEulerAbstract.a">(thetis.rungekutta.ForwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ImplicitMidpointAbstract.a">(thetis.rungekutta.ImplicitMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.SSPRK33Abstract.a">(thetis.rungekutta.SSPRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.JackettEquationOfState.a">(thetis.utility3d.JackettEquationOfState attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.TidalTurbineOptions.A_support">A_support (thetis.options.TidalTurbineOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.configuration.ABCMetaHasTraits">ABCMetaHasTraits (class in thetis.configuration)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.AbstractRKScheme">AbstractRKScheme (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.callback.AccumulatorCallback">AccumulatorCallback (class in thetis.callback)</a>
</li>
<li><a href="thetis.html#thetis.options.TimeStepperOptions.ad_block_tag">ad_block_tag (thetis.options.TimeStepperOptions attribute)</a>
<ul>
<li><a href="thetis.html#thetis.options.TimeStepperOptions3d.ad_block_tag">(thetis.options.TimeStepperOptions3d attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.callback.CallbackManager.add">add() (thetis.callback.CallbackManager method)</a>
<ul>
<li><a href="thetis.html#thetis.utility.SumFunction.add">(thetis.utility.SumFunction method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.solver.FlowSolver.add_callback">add_callback() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.add_callback">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.tracer_eq_2d.TracerEquation2D.add_conservative_terms">add_conservative_terms() (thetis.tracer_eq_2d.TracerEquation2D method)</a>
</li>
<li><a href="thetis.html#thetis.shallowwater_eq.BaseShallowWaterEquation.add_continuity_terms">add_continuity_terms() (thetis.shallowwater_eq.BaseShallowWaterEquation method)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.InversionManager.add_control">add_control() (thetis.inversion_tools.InversionManager method)</a>
</li>
<li><a href="thetis.html#thetis.exporter.ExportManager.add_export">add_export() (thetis.exporter.ExportManager method)</a>
</li>
<li><a href="thetis.html#thetis.shallowwater_eq.BaseShallowWaterEquation.add_momentum_terms">add_momentum_terms() (thetis.shallowwater_eq.BaseShallowWaterEquation method)</a>
<ul>
<li><a href="thetis.html#thetis.shallowwater_eq.ModeSplit2DEquations.add_momentum_terms">(thetis.shallowwater_eq.ModeSplit2DEquations method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.solver.FlowSolver.add_new_field">add_new_field() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.add_new_field">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.tracer_eq_2d.TracerEquation2D.add_nonconservative_terms">add_nonconservative_terms() (thetis.tracer_eq_2d.TracerEquation2D method)</a>
</li>
<li><a href="thetis.html#thetis.equation.Equation.add_term">add_term() (thetis.equation.Equation method)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions2d.add_tracer_2d">add_tracer_2d() (thetis.options.ModelOptions2d method)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions2d.add_tracer_system_2d">add_tracer_system_2d() (thetis.options.ModelOptions2d method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.turbines.DiscreteTidalTurbineFarm.add_turbines">add_turbines() (thetis.turbines.DiscreteTidalTurbineFarm method)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledLeapFrogAM3.advance">advance() (thetis.coupled_timeintegrator.CoupledLeapFrogAM3 method)</a>
<ul>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledTwoStageRK.advance">(thetis.coupled_timeintegrator.CoupledTwoStageRK method)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D.advance">(thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator_2d.NonHydrostaticTimeIntegrator2D.advance">(thetis.coupled_timeintegrator_2d.NonHydrostaticTimeIntegrator2D method)</a>
</li>
<li><a href="thetis.html#thetis.implicitexplicit.IMEXGeneric.advance">(thetis.implicitexplicit.IMEXGeneric method)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKGenericShuOsher.advance">(thetis.rungekutta.ERKGenericShuOsher method)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.RungeKuttaTimeIntegrator.advance">(thetis.rungekutta.RungeKuttaTimeIntegrator method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.CrankNicolson.advance">(thetis.timeintegrator.CrankNicolson method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.ForwardEuler.advance">(thetis.timeintegrator.ForwardEuler method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.LeapFrogAM3.advance">(thetis.timeintegrator.LeapFrogAM3 method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.PressureProjectionPicard.advance">(thetis.timeintegrator.PressureProjectionPicard method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.SSPRK22ALE.advance">(thetis.timeintegrator.SSPRK22ALE method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.SteadyState.advance">(thetis.timeintegrator.SteadyState method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.TimeIntegratorBase.advance">(thetis.timeintegrator.TimeIntegratorBase method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D.advance_picard">advance_picard() (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method)</a>
<ul>
<li><a href="thetis.html#thetis.timeintegrator.CrankNicolson.advance_picard">(thetis.timeintegrator.CrankNicolson method)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.TimeIntegrator.advance_picard">(thetis.timeintegrator.TimeIntegrator method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.utility3d.ALEMeshUpdater">ALEMeshUpdater (class in thetis.utility3d)</a>
</li>
<li><a href="thetis.html#thetis.options.LinearEquationOfStateOptions.alpha">alpha (thetis.options.LinearEquationOfStateOptions attribute)</a>
<ul>
<li><a href="thetis.html#thetis.options.PacanowskiPhilanderModelOptions.alpha">(thetis.options.PacanowskiPhilanderModelOptions attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.utility.anisotropic_cell_size">anisotropic_cell_size() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.assembledschur.AssembledSchurPC.apply">apply() (thetis.assembledschur.AssembledSchurPC method)</a>
<ul>
<li><a href="thetis.html#thetis.limiter.VertexBasedP1DGLimiter.apply">(thetis.limiter.VertexBasedP1DGLimiter method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.apply_defaults">apply_defaults() (thetis.options.GLSModelOptions method)</a>
</li>
<li><a href="thetis.html#thetis.options.TidalTurbineOptions.apply_shear_profile">apply_shear_profile (thetis.options.TidalTurbineOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.tracer_eq_2d.TracerEquation2D.apply_supg">apply_supg() (thetis.tracer_eq_2d.TracerEquation2D method)</a>
</li>
<li><a href="thetis.html#thetis.assembledschur.AssembledSchurPC.applyTranspose">applyTranspose() (thetis.assembledschur.AssembledSchurPC method)</a>
</li>
<li><a href="thetis.html#thetis.assembledschur.AssembledSchurPC">AssembledSchurPC (class in thetis.assembledschur)</a>
</li>
<li><a href="thetis.html#thetis.limiter.assert_function_space">assert_function_space() (in module thetis.limiter)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.assign_initial_conditions">assign_initial_conditions() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.assign_initial_conditions">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.forcing.ATMInterpolator">ATMInterpolator (class in thetis.forcing)</a>
</li>
<li><a href="thetis.html#thetis.forcing.ATMNetCDFTime">ATMNetCDFTime (class in thetis.forcing)</a>
</li>
<li><a href="thetis.html#thetis.options.CommonModelOptions.atmospheric_pressure">atmospheric_pressure (thetis.options.CommonModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.forcing.AtmosphericForcingInterpolator">AtmosphericForcingInterpolator (class in thetis.forcing)</a>
</li>
<li><a href="thetis.html#thetis.shallowwater_eq.AtmosphericPressureTerm">AtmosphericPressureTerm (class in thetis.shallowwater_eq)</a>
</li>
<li><a href="thetis.html#thetis.configuration.attach_paired_options">attach_paired_options() (in module thetis.configuration)</a>
</li>
<li><a href="thetis.html#thetis.utility.AttrDict">AttrDict (class in thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.options.SedimentModelOptions.average_sediment_size">average_sediment_size (thetis.options.SedimentModelOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.rungekutta.AbstractRKScheme.b">b (thetis.rungekutta.AbstractRKScheme property)</a>
<ul>
<li><a href="thetis.html#thetis.rungekutta.BackwardEulerAbstract.b">(thetis.rungekutta.BackwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.CrankNicolsonAbstract.b">(thetis.rungekutta.CrankNicolsonAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK22Abstract.b">(thetis.rungekutta.DIRK22Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK23Abstract.b">(thetis.rungekutta.DIRK23Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract.b">(thetis.rungekutta.DIRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK43Abstract.b">(thetis.rungekutta.DIRK43Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLPUM2Abstract.b">(thetis.rungekutta.DIRKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLSPUM2Abstract.b">(thetis.rungekutta.DIRKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLPUM2Abstract.b">(thetis.rungekutta.ERKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLSPUM2Abstract.b">(thetis.rungekutta.ERKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKMidpointAbstract.b">(thetis.rungekutta.ERKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKMidpointAbstract.b">(thetis.rungekutta.ESDIRKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKTrapezoidAbstract.b">(thetis.rungekutta.ESDIRKTrapezoidAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ForwardEulerAbstract.b">(thetis.rungekutta.ForwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ImplicitMidpointAbstract.b">(thetis.rungekutta.ImplicitMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.SSPRK33Abstract.b">(thetis.rungekutta.SSPRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.JackettEquationOfState.b">(thetis.utility3d.JackettEquationOfState attribute)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract.b1">b1 (thetis.rungekutta.DIRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract.b2">b2 (thetis.rungekutta.DIRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.BackwardEuler">BackwardEuler (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.BackwardEulerAbstract">BackwardEulerAbstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.BackwardEulerUForm">BackwardEulerUForm (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.shallowwater_eq.BaseShallowWaterEquation">BaseShallowWaterEquation (class in thetis.shallowwater_eq)</a>
</li>
<li><a href="thetis.html#thetis.options.SedimentModelOptions.bed_reference_height">bed_reference_height (thetis.options.SedimentModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.LinearEquationOfStateOptions.beta">beta (thetis.options.LinearEquationOfStateOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.utility.beta_plane_coriolis_function">beta_plane_coriolis_function() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.utility.beta_plane_coriolis_params">beta_plane_coriolis_params() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.bottom_roughness">bottom_roughness (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.shallowwater_eq.BottomDrag3DTerm">BottomDrag3DTerm (class in thetis.shallowwater_eq)</a>
</li>
<li><a href="thetis.html#thetis.momentum_eq.BottomFrictionTerm">BottomFrictionTerm (class in thetis.momentum_eq)</a>
</li>
<li><a href="thetis.html#thetis.configuration.BoundedFloat">BoundedFloat (class in thetis.configuration)</a>
</li>
<li><a href="thetis.html#thetis.configuration.BoundedInteger">BoundedInteger (class in thetis.configuration)</a>
</li>
<li><a href="thetis.html#thetis.options.TidalTurbineFarmOptions.break_even_wattage">break_even_wattage (thetis.options.TidalTurbineFarmOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.turbulence.BuoyFrequencySolver">BuoyFrequencySolver (class in thetis.turbulence)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.butcher_to_shuosher_form">butcher_to_shuosher_form() (in module thetis.rungekutta)</a>
</li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.rungekutta.AbstractRKScheme.c">c (thetis.rungekutta.AbstractRKScheme property)</a>
<ul>
<li><a href="thetis.html#thetis.rungekutta.BackwardEulerAbstract.c">(thetis.rungekutta.BackwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.CrankNicolsonAbstract.c">(thetis.rungekutta.CrankNicolsonAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK22Abstract.c">(thetis.rungekutta.DIRK22Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK23Abstract.c">(thetis.rungekutta.DIRK23Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract.c">(thetis.rungekutta.DIRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK43Abstract.c">(thetis.rungekutta.DIRK43Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLPUM2Abstract.c">(thetis.rungekutta.DIRKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLSPUM2Abstract.c">(thetis.rungekutta.DIRKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLPUM2Abstract.c">(thetis.rungekutta.ERKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLSPUM2Abstract.c">(thetis.rungekutta.ERKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKMidpointAbstract.c">(thetis.rungekutta.ERKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKMidpointAbstract.c">(thetis.rungekutta.ESDIRKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKTrapezoidAbstract.c">(thetis.rungekutta.ESDIRKTrapezoidAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ForwardEulerAbstract.c">(thetis.rungekutta.ForwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ImplicitMidpointAbstract.c">(thetis.rungekutta.ImplicitMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.SSPRK33Abstract.c">(thetis.rungekutta.SSPRK33Abstract attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.c1">c1 (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.c2">c2 (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.c3_minus">c3_minus (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.c3_plus">c3_plus (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.TidalTurbineOptions.C_support">C_support (thetis.options.TidalTurbineOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.ControlsExportOptimisationCallback.callback">callback() (thetis.optimisation.ControlsExportOptimisationCallback method)</a>
<ul>
<li><a href="thetis.html#thetis.optimisation.DerivativesExportOptimisationCallback.callback">(thetis.optimisation.DerivativesExportOptimisationCallback method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.DiagnosticOptimisationCallback.callback">(thetis.optimisation.DiagnosticOptimisationCallback method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.OptimisationCallback.callback">(thetis.optimisation.OptimisationCallback method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.OptimisationCallbackList.callback">(thetis.optimisation.OptimisationCallbackList method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.UserExportOptimisationCallback.callback">(thetis.optimisation.UserExportOptimisationCallback method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.callback.CallbackManager">CallbackManager (class in thetis.callback)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.callbacks">callbacks (thetis.solver.FlowSolver attribute)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.callbacks">(thetis.solver2d.FlowSolver2d attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cb1">cb1 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cb1">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cb1">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cb1">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cb2">cb2 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cb2">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cb2">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cb2">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cb3">cb3 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cb3">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cb3">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cb3">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cb4">cb4 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cb4">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cb4">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cb4">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cb5">cb5 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cb5">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cb5">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cb5">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cbb">cbb (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cbb">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cbb">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cbb">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cc1">cc1 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cc1">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cc1">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cc1">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cc2">cc2 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cc2">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cc2">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cc2">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cc3">cc3 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cc3">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cc3">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cc3">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cc4">cc4 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cc4">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cc4">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cc4">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cc5">cc5 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cc5">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cc5">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cc5">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoA.cc6">cc6 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute)</a>
<ul>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCanutoB.cc6">(thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionCheng.cc6">(thetis.stability_functions.GOTMStabilityFunctionCheng attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.GOTMStabilityFunctionKanthaClayson.cc6">(thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.CommonModelOptions.cfl_2d">cfl_2d (thetis.options.CommonModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.CommonModelOptions.cfl_3d">cfl_3d (thetis.options.CommonModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.AbstractRKScheme.cfl_coeff">cfl_coeff (thetis.rungekutta.AbstractRKScheme property)</a>
<ul>
<li><a href="thetis.html#thetis.rungekutta.BackwardEulerAbstract.cfl_coeff">(thetis.rungekutta.BackwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.CrankNicolsonAbstract.cfl_coeff">(thetis.rungekutta.CrankNicolsonAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK22Abstract.cfl_coeff">(thetis.rungekutta.DIRK22Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK23Abstract.cfl_coeff">(thetis.rungekutta.DIRK23Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract.cfl_coeff">(thetis.rungekutta.DIRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK43Abstract.cfl_coeff">(thetis.rungekutta.DIRK43Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKGenericUForm.cfl_coeff">(thetis.rungekutta.DIRKGenericUForm attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLPUM2Abstract.cfl_coeff">(thetis.rungekutta.DIRKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLSPUM2Abstract.cfl_coeff">(thetis.rungekutta.DIRKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLPUM2Abstract.cfl_coeff">(thetis.rungekutta.ERKLPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKLSPUM2Abstract.cfl_coeff">(thetis.rungekutta.ERKLSPUM2Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ERKMidpointAbstract.cfl_coeff">(thetis.rungekutta.ERKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKMidpointAbstract.cfl_coeff">(thetis.rungekutta.ESDIRKMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ESDIRKTrapezoidAbstract.cfl_coeff">(thetis.rungekutta.ESDIRKTrapezoidAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ForwardEulerAbstract.cfl_coeff">(thetis.rungekutta.ForwardEulerAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.ImplicitMidpointAbstract.cfl_coeff">(thetis.rungekutta.ImplicitMidpointAbstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.SSPRK33Abstract.cfl_coeff">(thetis.rungekutta.SSPRK33Abstract attribute)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.CrankNicolson.cfl_coeff">(thetis.timeintegrator.CrankNicolson attribute)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.ForwardEuler.cfl_coeff">(thetis.timeintegrator.ForwardEuler attribute)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.LeapFrogAM3.cfl_coeff">(thetis.timeintegrator.LeapFrogAM3 attribute)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.PressureProjectionPicard.cfl_coeff">(thetis.timeintegrator.PressureProjectionPicard attribute)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.SSPRK22ALE.cfl_coeff">(thetis.timeintegrator.SSPRK22ALE attribute)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.SteadyState.cfl_coeff">(thetis.timeintegrator.SteadyState attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.check_salinity_conservation">check_salinity_conservation (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.check_salinity_overshoot">check_salinity_overshoot (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.SedimentModelOptions.check_sediment_conservation">check_sediment_conservation (thetis.options.SedimentModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.SedimentModelOptions.check_sediment_overshoot">check_sediment_overshoot (thetis.options.SedimentModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.check_temperature_conservation">check_temperature_conservation (thetis.options.ModelOptions3d attribute)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.options.ModelOptions3d.check_temperature_overshoot">check_temperature_overshoot (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions2d.check_tracer_conservation">check_tracer_conservation (thetis.options.ModelOptions2d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions2d.check_tracer_overshoot">check_tracer_overshoot (thetis.options.ModelOptions2d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.CommonModelOptions.check_volume_conservation_2d">check_volume_conservation_2d (thetis.options.CommonModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.check_volume_conservation_3d">check_volume_conservation_3d (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.closure_name">closure_name (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.cmu0">cmu0 (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.MultiStationObservationManager.collect_time_series">collect_time_series() (thetis.inversion_tools.MultiStationObservationManager method)</a>
<ul>
<li><a href="thetis.html#thetis.inversion_tools.StationObservationManager.collect_time_series">(thetis.inversion_tools.StationObservationManager method)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.StationObservationManagerBase.collect_time_series">(thetis.inversion_tools.StationObservationManagerBase method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.CommonModelOptions">CommonModelOptions (class in thetis.options)</a>
</li>
<li><a href="thetis.html#thetis.utility.comp_tracer_mass_2d">comp_tracer_mass_2d() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.utility.comp_tracer_mass_3d">comp_tracer_mass_3d() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.utility.comp_volume_2d">comp_volume_2d() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.utility.comp_volume_3d">comp_volume_3d() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.tracer_eq_2d.TracerTerm.component">component() (thetis.tracer_eq_2d.TracerTerm method)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.StabilityFunctionBase.compute_alpha_shear_steady">compute_alpha_shear_steady() (thetis.stability_functions.StabilityFunctionBase method)</a>
</li>
<li><a href="thetis.html#thetis.utility.compute_baroclinic_head">compute_baroclinic_head() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.utility.compute_boundary_length">compute_boundary_length() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.limiter.VertexBasedP1DGLimiter.compute_bounds">compute_bounds() (thetis.limiter.VertexBasedP1DGLimiter method)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_c3_minus">compute_c3_minus (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.StabilityFunctionBase.compute_c3_minus">compute_c3_minus() (thetis.stability_functions.StabilityFunctionBase method)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_cmu0">compute_cmu0 (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.StabilityFunctionBase.compute_cmu0">compute_cmu0() (thetis.stability_functions.StabilityFunctionBase method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_dt_2d">compute_dt_2d() (thetis.solver.FlowSolver method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_dt_diffusion">compute_dt_diffusion() (thetis.solver.FlowSolver method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_dt_h_advection">compute_dt_h_advection() (thetis.solver.FlowSolver method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_dt_v_advection">compute_dt_v_advection() (thetis.solver.FlowSolver method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_dx_factor">compute_dx_factor() (thetis.solver.FlowSolver method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_dz_factor">compute_dz_factor() (thetis.solver.FlowSolver method)</a>
</li>
<li><a href="thetis.html#thetis.utility.compute_elem_height">compute_elem_height() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_galperin_clim">compute_galperin_clim (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_kappa">compute_kappa (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.StabilityFunctionBase.compute_kappa">compute_kappa() (thetis.stability_functions.StabilityFunctionBase method)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_len_min">compute_len_min (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.StabilityFunctionBase.compute_length_clim">compute_length_clim() (thetis.stability_functions.StabilityFunctionBase method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.compute_mesh_stats">compute_mesh_stats() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.compute_mesh_stats">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledTwoStageRK.compute_mesh_velocity">compute_mesh_velocity() (thetis.coupled_timeintegrator.CoupledTwoStageRK method)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.ALEMeshUpdater.compute_mesh_velocity_begin">compute_mesh_velocity_begin() (thetis.utility3d.ALEMeshUpdater method)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.ALEMeshUpdater.compute_mesh_velocity_finalize">compute_mesh_velocity_finalize() (thetis.utility3d.ALEMeshUpdater method)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.compute_normalized_frequencies">compute_normalized_frequencies() (in module thetis.stability_functions)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_psi_min">compute_psi_min (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.EquationOfState.compute_rho">compute_rho() (thetis.utility3d.EquationOfState method)</a>
<ul>
<li><a href="thetis.html#thetis.utility3d.JackettEquationOfState.compute_rho">(thetis.utility3d.JackettEquationOfState method)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.LinearEquationOfState.compute_rho">(thetis.utility3d.LinearEquationOfState method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.compute_schmidt_nb_psi">compute_schmidt_nb_psi (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.stability_functions.StabilityFunctionBase.compute_sigma_psi">compute_sigma_psi() (thetis.stability_functions.StabilityFunctionBase method)</a>
</li>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.compute_time_step">compute_time_step() (thetis.solver2d.FlowSolver2d method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.ConstantControlOptimisationCallback.compute_values">compute_values() (thetis.optimisation.ConstantControlOptimisationCallback method)</a>
<ul>
<li><a href="thetis.html#thetis.optimisation.DerivativeConstantControlOptimisationCallback.compute_values">(thetis.optimisation.DerivativeConstantControlOptimisationCallback method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.DiagnosticOptimisationCallback.compute_values">(thetis.optimisation.DiagnosticOptimisationCallback method)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.FunctionalOptimisationCallback.compute_values">(thetis.optimisation.FunctionalOptimisationCallback method)</a>
</li>
<li><a href="thetis.html#thetis.turbines.TurbineOptimisationCallback.compute_values">(thetis.turbines.TurbineOptimisationCallback method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.forcing.FES2004TidalBoundaryForcing.compute_velocity">compute_velocity (thetis.forcing.FES2004TidalBoundaryForcing attribute)</a>
<ul>
<li><a href="thetis.html#thetis.forcing.TidalBoundaryForcing.compute_velocity">(thetis.forcing.TidalBoundaryForcing property)</a>
</li>
<li><a href="thetis.html#thetis.forcing.TPXOTidalBoundaryForcing.compute_velocity">(thetis.forcing.TPXOTidalBoundaryForcing attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.forcing.compute_wind_stress">compute_wind_stress() (in module thetis.forcing)</a>
</li>
<li><a href="thetis.html#thetis.tracer_eq_2d.ConservativeHorizontalAdvectionTerm">ConservativeHorizontalAdvectionTerm (class in thetis.tracer_eq_2d)</a>
</li>
<li><a href="thetis.html#thetis.tracer_eq_2d.ConservativeHorizontalDiffusionTerm">ConservativeHorizontalDiffusionTerm (class in thetis.tracer_eq_2d)</a>
</li>
<li><a href="thetis.html#thetis.sediment_eq_2d.ConservativeSedimentAdvectionTerm">ConservativeSedimentAdvectionTerm (class in thetis.sediment_eq_2d)</a>
</li>
<li><a href="thetis.html#thetis.tracer_eq_2d.ConservativeSourceTerm">ConservativeSourceTerm (class in thetis.tracer_eq_2d)</a>
</li>
<li><a href="thetis.html#thetis.callback.ConservativeTracerMassConservation2DCallback">ConservativeTracerMassConservation2DCallback (class in thetis.callback)</a>
</li>
<li><a href="thetis.html#thetis.tracer_eq_2d.ConservativeTracerTerm">ConservativeTracerTerm (class in thetis.tracer_eq_2d)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.InversionManager.consistency_test">consistency_test() (thetis.inversion_tools.InversionManager method)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.constant_salinity">constant_salinity (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions3d.constant_temperature">constant_temperature (thetis.options.ModelOptions3d attribute)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.ConstantControlOptimisationCallback">ConstantControlOptimisationCallback (class in thetis.optimisation)</a>
</li>
<li><a href="thetis.html#thetis.turbines.ConstantThrustTurbine">ConstantThrustTurbine (class in thetis.turbines)</a>
</li>
<li><a href="thetis.html#thetis.options.ConstantTidalTurbineOptions">ConstantTidalTurbineOptions (class in thetis.options)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.StationObservationManager.construct_evaluator">construct_evaluator() (thetis.inversion_tools.StationObservationManager method)</a>
</li>
<li><a href="thetis.html#thetis.shallowwater_eq.ContinuitySourceTerm">ContinuitySourceTerm (class in thetis.shallowwater_eq)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.InversionManager.control_coeff_list">control_coeff_list (thetis.inversion_tools.InversionManager property)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.InversionManager.control_list">control_list (thetis.inversion_tools.InversionManager property)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.ControlManager">ControlManager (class in thetis.inversion_tools)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.ControlRegularizationManager">ControlRegularizationManager (class in thetis.inversion_tools)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.ControlsExportOptimisationCallback">ControlsExportOptimisationCallback (class in thetis.optimisation)</a>
</li>
<li><a href="thetis.html#thetis.forcing.FES2004TidalBoundaryForcing.coord_layout">coord_layout (thetis.forcing.FES2004TidalBoundaryForcing attribute)</a>
<ul>
<li><a href="thetis.html#thetis.forcing.TidalBoundaryForcing.coord_layout">(thetis.forcing.TidalBoundaryForcing property)</a>
</li>
<li><a href="thetis.html#thetis.forcing.TPXOTidalBoundaryForcing.coord_layout">(thetis.forcing.TPXOTidalBoundaryForcing attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.coordsys.CoordinateSystem">CoordinateSystem (class in thetis.coordsys)</a>
</li>
<li><a href="thetis.html#thetis.options.CommonModelOptions.coriolis_frequency">coriolis_frequency (thetis.options.CommonModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.momentum_eq.CoriolisTerm">CoriolisTerm (class in thetis.momentum_eq)</a>
<ul>
<li><a href="thetis.html#thetis.shallowwater_eq.CoriolisTerm">(class in thetis.shallowwater_eq)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.timeintegrator.LeapFrogAM3.correct">correct() (thetis.timeintegrator.LeapFrogAM3 method)</a>
</li>
<li><a href="thetis.html#thetis.sediment_model.CorrectiveVelocityFactor">CorrectiveVelocityFactor (class in thetis.sediment_model)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.CostFunctionCallback">CostFunctionCallback (class in thetis.inversion_tools)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledLeapFrogAM3">CoupledLeapFrogAM3 (class in thetis.coupled_timeintegrator)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledTimeIntegrator">CoupledTimeIntegrator (class in thetis.coupled_timeintegrator)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D">CoupledTimeIntegrator2D (class in thetis.coupled_timeintegrator_2d)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledTimeIntegratorBase">CoupledTimeIntegratorBase (class in thetis.coupled_timeintegrator)</a>
</li>
<li><a href="thetis.html#thetis.coupled_timeintegrator.CoupledTwoStageRK">CoupledTwoStageRK (class in thetis.coupled_timeintegrator)</a>
</li>
<li><a href="thetis.html#thetis.timeintegrator.CrankNicolson">CrankNicolson (class in thetis.timeintegrator)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.CrankNicolsonAbstract">CrankNicolsonAbstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.CrankNicolsonRK">CrankNicolsonRK (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.options.CrankNicolsonSWETimeStepperOptions2d">CrankNicolsonSWETimeStepperOptions2d (class in thetis.options)</a>
</li>
<li><a href="thetis.html#thetis.options.CrankNicolsonTracerTimeStepperOptions2d">CrankNicolsonTracerTimeStepperOptions2d (class in thetis.options)</a>
</li>
<li><a href="thetis.html#thetis.utility.create_directory">create_directory() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.create_equations">create_equations() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.create_equations">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.solver.FlowSolver.create_exporters">create_exporters() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.create_exporters">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.solver.FlowSolver.create_fields">create_fields() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.create_fields">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.timeintegrator.TimeIntegrator.create_fields_old">create_fields_old() (thetis.timeintegrator.TimeIntegrator method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.create_function_spaces">create_function_spaces() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.create_function_spaces">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.create_iterator">create_iterator() (thetis.solver2d.FlowSolver2d method)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.create_timestepper">create_timestepper() (thetis.solver.FlowSolver method)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.create_timestepper">(thetis.solver2d.FlowSolver2d method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.log.critical">critical() (in module thetis.log)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.interpolation.DailyFileTimeSearch">DailyFileTimeSearch (class in thetis.interpolation)</a>
</li>
<li><a href="thetis.html#thetis.timezone.datetime_to_epoch">datetime_to_epoch() (in module thetis.timezone)</a>
</li>
<li><a href="thetis.html#thetis.configuration.DatetimeTraitlet">DatetimeTraitlet (class in thetis.configuration)</a>
</li>
<li><a href="thetis.html#thetis.log.debug">debug() (in module thetis.log)</a>
</li>
<li><a href="thetis.html#thetis.configuration.DatetimeTraitlet.default_value">default_value (thetis.configuration.DatetimeTraitlet attribute)</a>
<ul>
<li><a href="thetis.html#thetis.configuration.FiredrakeCoefficient.default_value">(thetis.configuration.FiredrakeCoefficient attribute)</a>
</li>
<li><a href="thetis.html#thetis.configuration.FiredrakeConstantTraitlet.default_value">(thetis.configuration.FiredrakeConstantTraitlet attribute)</a>
</li>
<li><a href="thetis.html#thetis.configuration.FiredrakeScalarExpression.default_value">(thetis.configuration.FiredrakeScalarExpression attribute)</a>
</li>
<li><a href="thetis.html#thetis.configuration.FiredrakeVectorExpression.default_value">(thetis.configuration.FiredrakeVectorExpression attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.configuration.FiredrakeCoefficient.default_value_repr">default_value_repr() (thetis.configuration.FiredrakeCoefficient method)</a>
<ul>
<li><a href="thetis.html#thetis.configuration.FiredrakeConstantTraitlet.default_value_repr">(thetis.configuration.FiredrakeConstantTraitlet method)</a>
</li>
<li><a href="thetis.html#thetis.configuration.FiredrakeScalarExpression.default_value_repr">(thetis.configuration.FiredrakeScalarExpression method)</a>
</li>
<li><a href="thetis.html#thetis.configuration.FiredrakeVectorExpression.default_value_repr">(thetis.configuration.FiredrakeVectorExpression method)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.optimisation.DeferredExportManager">DeferredExportManager (class in thetis.optimisation)</a>
</li>
<li><a href="thetis.html#thetis.diagnostics.KineticEnergyCalculator.density">density (thetis.diagnostics.KineticEnergyCalculator attribute)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.DensitySolver">DensitySolver (class in thetis.utility3d)</a>
</li>
<li><a href="thetis.html#thetis.utility3d.DensitySolverWeak">DensitySolverWeak (class in thetis.utility3d)</a>
</li>
<li><a href="thetis.html#thetis.utility.DepthExpression">DepthExpression (class in thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.utility.DepthIntegratedPoissonSolver">DepthIntegratedPoissonSolver (class in thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.DerivativeConstantControlOptimisationCallback">DerivativeConstantControlOptimisationCallback (class in thetis.optimisation)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.DerivativesExportOptimisationCallback">DerivativesExportOptimisationCallback (class in thetis.optimisation)</a>
</li>
<li><a href="thetis.html#thetis.callback.DetectorsCallback">DetectorsCallback (class in thetis.callback)</a>
</li>
<li><a href="thetis.html#thetis.callback.DiagnosticCallback">DiagnosticCallback (class in thetis.callback)</a>
</li>
<li><a href="thetis.html#thetis.callback.DiagnosticHDF5">DiagnosticHDF5 (class in thetis.callback)</a>
</li>
<li><a href="thetis.html#thetis.optimisation.DiagnosticOptimisationCallback">DiagnosticOptimisationCallback (class in thetis.optimisation)</a>
</li>
<li><a href="thetis.html#thetis.options.TidalTurbineOptions.diameter">diameter (thetis.options.TidalTurbineOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.GLSModelOptions.diff_min">diff_min (thetis.options.GLSModelOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.options.TracerFieldOptions.diffusivity">diffusivity (thetis.options.TracerFieldOptions attribute)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK22">DIRK22 (class in thetis.rungekutta)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.rungekutta.DIRK22Abstract">DIRK22Abstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK22UForm">DIRK22UForm (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK23">DIRK23 (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK23Abstract">DIRK23Abstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33">DIRK33 (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33Abstract">DIRK33Abstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK33UForm">DIRK33UForm (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK43">DIRK43 (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRK43Abstract">DIRK43Abstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.implicitexplicit.IMEXEuler.dirk_class">dirk_class (thetis.implicitexplicit.IMEXEuler attribute)</a>
<ul>
<li><a href="thetis.html#thetis.implicitexplicit.IMEXGeneric.dirk_class">(thetis.implicitexplicit.IMEXGeneric property)</a>
</li>
<li><a href="thetis.html#thetis.implicitexplicit.IMEXLPUM2.dirk_class">(thetis.implicitexplicit.IMEXLPUM2 attribute)</a>
</li>
<li><a href="thetis.html#thetis.implicitexplicit.IMEXLSPUM2.dirk_class">(thetis.implicitexplicit.IMEXLSPUM2 attribute)</a>
</li>
<li><a href="thetis.html#thetis.implicitexplicit.IMEXMidpoint.dirk_class">(thetis.implicitexplicit.IMEXMidpoint attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.rungekutta.DIRKGeneric">DIRKGeneric (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKGenericUForm">DIRKGenericUForm (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLPUM2">DIRKLPUM2 (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLPUM2Abstract">DIRKLPUM2Abstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLSPUM2">DIRKLSPUM2 (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.rungekutta.DIRKLSPUM2Abstract">DIRKLSPUM2Abstract (class in thetis.rungekutta)</a>
</li>
<li><a href="thetis.html#thetis.options.ModelOptions2d.discrete_tidal_turbine_farms">discrete_tidal_turbine_farms (thetis.options.ModelOptions2d attribute)</a>
</li>
<li><a href="thetis.html#thetis.turbines.DiscreteTidalTurbineFarm">DiscreteTidalTurbineFarm (class in thetis.turbines)</a>
</li>
<li><a href="thetis.html#thetis.options.DiscreteTidalTurbineFarmOptions">DiscreteTidalTurbineFarmOptions (class in thetis.options)</a>
</li>
<li><a href="thetis.html#thetis.utility.domain_constant">domain_constant() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.solver.FlowSolver.dt">dt (thetis.solver.FlowSolver attribute)</a>
<ul>
<li><a href="thetis.html#thetis.solver2d.FlowSolver2d.dt">(thetis.solver2d.FlowSolver2d attribute)</a>
</li>
</ul></li>
<li><a href="thetis.html#thetis.solver.FlowSolver.dt_2d">dt_2d (thetis.solver.FlowSolver attribute)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.MultiStationObservationManager.dump_time_series">dump_time_series() (thetis.inversion_tools.MultiStationObservationManager method)</a>
<ul>
<li><a href="thetis.html#thetis.inversion_tools.StationObservationManager.dump_time_series">(thetis.inversion_tools.StationObservationManager method)</a>
</li>
<li><a href="thetis.html#thetis.inversion_tools.StationObservationManagerBase.dump_time_series">(thetis.inversion_tools.StationObservationManagerBase method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="thetis.html#thetis.utility.element_continuity">element_continuity() (in module thetis.utility)</a>
</li>
<li><a href="thetis.html#thetis.options.CommonModelOptions.element_family">element_family (thetis.options.CommonModelOptions attribute)</a>