When the wilcoxon test suggest that a sequence has been duplicated, it may be useful to show users a Dotplot (i.e. a sequence against itself). This would inform users in a highly visual manner, the region of the sequence that is duplicated and the rough percentage of the sequence that has been duplicated.
In order to avoid noise in DotPlot, one could simply use a window size equivalent to the duplicated region.
By DotPlot - I'm referring to something like:
This was produced by Dotter
When the wilcoxon test suggest that a sequence has been duplicated, it may be useful to show users a Dotplot (i.e. a sequence against itself). This would inform users in a highly visual manner, the region of the sequence that is duplicated and the rough percentage of the sequence that has been duplicated.
In order to avoid noise in DotPlot, one could simply use a window size equivalent to the duplicated region.
By DotPlot - I'm referring to something like:
This was produced by Dotter