Issues

• [ERROR] Incorrect phenotype file format [ uba.pheno ], check column number [ERROR] Loading phenotype failed!

  zhanxw/rvtests#154 · Filter by author Along-Liu-art opened on Jun 24, 2025

• exactCMC N00 is less than N10 and N01 < N11

  zhanxw/rvtests#153 · Filter by author samreenzafer opened on Apr 19, 2024

• --setFile how are overlapping regions handled?

  zhanxw/rvtests#152 · Filter by author samreenzafer opened on Apr 19, 2024

• Segmentation fault while running --meta cov

  zhanxw/rvtests#151 · Filter by author samreenzafer opened on Feb 16, 2024

• Order of Operations when using Frequency filter and Sample exclusion.

  zhanxw/rvtests#150 · Filter by author samreenzafer opened on Jan 23, 2024

• NAs in assoc file

  zhanxw/rvtests#149 · Filter by author lubapardo opened on Sep 28, 2023

• Output explanation

  zhanxw/rvtests#147 · Filter by author alexandransmith opened on Apr 7, 2023

• Output MAC or MAF for SKAT-O kernel test

  zhanxw/rvtests#146 · Filter by author wilsonava opened on Mar 10, 2023

• Runtime Bug Chromosome 2 UKB WES

  zhanxw/rvtests#145 · Filter by author wilsonava opened on Feb 19, 2023

• SKAT/CMC: Missing covariates are not imputed, but dropped

  zhanxw/rvtests#144 · Filter by author katyaorlova opened on Feb 6, 2023
  2

• Some permutated p-values >1

  zhanxw/rvtests#142 · Filter by author UrsaGitHub opened on Dec 14, 2022

• No variants found in gene

  zhanxw/rvtests#141 · Filter by author jzollner opened on Aug 19, 2022

• Rvtests SKAT,SKATO keeps on running after removing one gene from '--gene' list

  zhanxw/rvtests#140 · Filter by author ChakrabortyShreya opened on Mar 25, 2022

• Reference allele output from rvtest

  zhanxw/rvtests#139 · Filter by author JuRaGa opened on Mar 20, 2022

• What/where is --outputRaw collapsed genotype?

  zhanxw/rvtests#138 · Filter by author aejen opened on Mar 7, 2022

• What do the duplicated lines in burden test with covariates output mean ?

  zhanxw/rvtests#134 · Filter by author marlenebrs opened on Jan 26, 2022

• SKATO: rvtest frozen/stalled (3 variants) (minimal example provided)

  zhanxw/rvtests#133 · Filter by author lindenb opened on Jan 25, 2022
  1

• User-specified weight per variant

  zhanxw/rvtests#132 · Filter by author ChristianDina opened on Jan 23, 2022

• FAMILY BASED STUDY Fam Score

  zhanxw/rvtests#131 · Filter by author medinacarolina opened on Jan 19, 2022

• 'setFile' format 0-based or 1-based ? refFlat: only exons ?

  zhanxw/rvtests#130 · Filter by author lindenb opened on Jan 17, 2022
  1

• CHrX warning

  zhanxw/rvtests#128 · Filter by author medinacarolina opened on Oct 6, 2021

• Rvtests SKAT-O output

  zhanxw/rvtests#127 · Filter by author anna-321 opened on Sep 21, 2021

• Job run time

  zhanxw/rvtests#126 · Filter by author SamiFarashi opened on Aug 3, 2021

• License that applies to rvtests?

  zhanxw/rvtests#125 · Filter by author heatherkellyucl opened on Jul 28, 2021
  1

• Support non-human variant analysis?

  zhanxw/rvtests#124 · Filter by author yige-luo opened on Jul 17, 2021