Release/0.5.0-beta, complete rewrite

.github/workflows/benchmark.yml

@@ -0,0 +1,29 @@
+name: Performance Regression Check
+on:
+  pull_request:
+    branches:
+      - 'main'
+      - 'release/**'
+
+jobs:
+  benchmark:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v7
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
+        with:
+          python-version: "3.12"
+          enable-cache: true
+
+      - name: Install package
+        run: uv sync --frozen
+
+      - name: Benchmark
+        run: uv run pytest --benchmark-compare=ci_baseline.json
+                           --benchmark-compare-fail=mean:100%
+                           --benchmark-warmup=on
+                           --benchmark-min-rounds=10
+                           benchmarks

.github/workflows/ci.yml

@@ -1,21 +1,32 @@
 name: unit tests
-on: [push]
+on:
+  push:
+    branches:
+      - 'main'
+      - 'release/**'
+  pull_request:
+    branches:
+      - 'main'
+      - 'release/**'
 jobs:
   test:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.10", "3.12"]
+        python-version: ["3.12", "3.13", "3.14"]
     steps:
-      - uses: actions/checkout@v4
+      - name: Checkout Repository
+        uses: actions/checkout@v7
 
-      - uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
         with:
           python-version: ${{ matrix.python-version }}
+          enable-cache: true
 
-      - name: Build
-        uses: ./.github/actions/build
+      - name: Install package
+        run: uv sync --frozen --extra all
 
-      - name: Test
-        uses: ./.github/actions/test
+      - name: Run Tests
+        run: uv run pytest tests

.github/workflows/coverage.yml

@@ -1,23 +1,30 @@
 name: coverage
 on: [push]
 jobs:
-    test:
-      runs-on: ubuntu-latest
-      steps:
-        - uses: actions/checkout@v4
+  if: github.repository == 'AleksanderWWW/abcd-graph'
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v7
 
-        - uses: actions/setup-python@v5
-          with:
-            python-version: "3.10"
+      - name: Setup uv
+        uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
+        with:
+          python-version: "3.12"
+          enable-cache: true
 
-        - name: Build
-          uses: ./.github/actions/build
+      - name: Install package
+        run: uv sync --frozen --extra all
 
-        - name: Test
-          uses: ./.github/actions/test
+      - name: Run tests
+        run: NUMBA_DISABLE_JIT=1 uv run pytest --junitxml=pytest.xml
+                           --cov-report=term-missing:skip-covered
+                           --cov=abcd_graph
+                           tests | tee pytest-coverage.txt
 
-        - name: Pytest coverage comment
-          uses: MishaKav/pytest-coverage-comment@main
-          with:
-            pytest-coverage-path: ./pytest-coverage.txt
-            junitxml-path: ./pytest.xml
+      - name: Pytest coverage comment
+        uses: MishaKav/pytest-coverage-comment@main
+        with:
+          pytest-coverage-path: ./pytest-coverage.txt
+          junitxml-path: ./pytest.xml

.github/workflows/docker-in-ci.yml

@@ -1,17 +1,21 @@
 name: docker
 
 on:
-  pull_request:
   push:
     branches:
-      - main
+      - 'main'
+      - 'release/**'
+  pull_request:
+    branches:
+      - 'main'
+      - 'release/**'
 
 jobs:
   docker-basic:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v7
 
       - name: Build docker basic image
         run: |
@@ -22,26 +26,27 @@ jobs:
           docker image inspect abcd-graph
 
       - name: Run Trivy vulnerability scanner
-        uses: aquasecurity/trivy-action@0.31.0
+        uses: aquasecurity/trivy-action@v0.36.0
         with:
           image-ref: 'abcd-graph'
           format: 'table'
           exit-code: '1'
           ignore-unfixed: true
           vuln-type: 'os,library'
           severity: 'CRITICAL,HIGH'
+          version: 'v0.74.0'
 
       - name: Run basic docker image
         run: |
-          docker run --rm abcd-graph -c "from abcd_graph import ABCDGraph, ABCDParams"
+          docker run --rm abcd-graph -c "from abcd_graph import ABCD, ABCDSample"
 
   docker-full:
     needs:
       - docker-basic
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v7
 
       - name: Build docker full image
         run: |
@@ -52,15 +57,16 @@ jobs:
           docker image inspect abcd-graph-full
 
       - name: Run Trivy vulnerability scanner
-        uses: aquasecurity/trivy-action@0.31.0
+        uses: aquasecurity/trivy-action@v0.36.0
         with:
           image-ref: 'abcd-graph-full'
           format: 'table'
           exit-code: '1'
           ignore-unfixed: true
           vuln-type: 'os,library'
           severity: 'CRITICAL,HIGH'
+          version: 'v0.74.0'
 
       - name: Run full docker image
         run: |
-          docker run --rm abcd-graph-full -c "import abcd_graph, igraph, networkx, scipy"
+          docker run --rm abcd-graph-full -c "from abcd_graph import ABCD, ABCDSample; import igraph; import networkx"

.github/workflows/pre-commit.yml

@@ -1,22 +1,18 @@
 name: pre-commit
 
 on:
-  pull_request:
   push:
     branches:
-      - main
+      - 'main'
+      - 'release/**'
+  pull_request:
+    branches:
+      - 'main'
+      - 'release/**'
 
 jobs:
   pre-commit:
     runs-on: ubuntu-latest
     steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
-
-    - name: Install Python
-      uses: actions/setup-python@v5
-      with:
-        python-version: "3.12"
-
-    - name: Run pre-commit
-      uses: pre-commit/action@v3.0.1
+      - uses: actions/checkout@v7
+      - uses: j178/prek-action@v3.0.0

.github/workflows/release.yml

@@ -9,11 +9,14 @@ jobs:
   publish:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
+      - name: Checkout Repository
+        uses: actions/checkout@v7
+
+      - name: Setup uv
+        uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
         with:
           python-version: "3.12"
-      - name: Install uv
-        run: curl -LsSf https://astral.sh/uv/install.sh | sh
+          enable-cache: true
+
       - name: Publish
         run: ./publish.sh ${{ secrets.PYPI_TOKEN }} ${{ secrets.GHCR_TOKEN }}

.gitignore

@@ -4,3 +4,9 @@ __pycache__/
 .coverage
 dist/
 .python-version
+.DS_store
+docs/_build
+.venv
+.ruff_cache
+.pytest_cache
+.benchmarks