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@allyhawkins allyhawkins released this 17 Sep 18:54
· 11 commits to main since this release
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The following includes the new modules developed by the Data Lab:

  • infercnv-consensus-cell-type: a module for exploring different strategies to use consensus cell types as a normal reference when running InferCNV
  • cell-type-neuroblastoma-04: a module for annotating the Neuroblastoma samples in SCPCP000004
  • cell-type-scimilarity: a module for annotating cells using SCimilarity

The cell-type-consensus module was updated to now incorporate annotations from the cell-type-scimilarity module such that consensus cell types are now assigned if 2 out of 3 methods agree (SingleR, CellAssign, and SCimilarity).

This release includes minor updates to the following modules:

  • cell-type-wilms-06
  • cell-type-ETP-ALL-03
  • cell-type-nonETP-ALL-03
  • cell-type-ewings

The following community-contributed analysis modules have been initiated and are in active development:

  • cell-type-osteosarcoma-23