The following includes the new modules developed by the Data Lab:
infercnv-consensus-cell-type: a module for exploring different strategies to use consensus cell types as a normal reference when runningInferCNVcell-type-neuroblastoma-04: a module for annotating the Neuroblastoma samples inSCPCP000004cell-type-scimilarity: a module for annotating cells usingSCimilarity
The cell-type-consensus module was updated to now incorporate annotations from the cell-type-scimilarity module such that consensus cell types are now assigned if 2 out of 3 methods agree (SingleR, CellAssign, and SCimilarity).
This release includes minor updates to the following modules:
cell-type-wilms-06cell-type-ETP-ALL-03cell-type-nonETP-ALL-03cell-type-ewings
The following community-contributed analysis modules have been initiated and are in active development:
cell-type-osteosarcoma-23