Issues

• Latent space algebra

  med-priority
  Bishop-Laboratory/autoPLIER-analysis#55 · Filter by author millerh1 opened on Dec 7, 2022
  1

• Comparison matrix vs NMF, PLIER, PCA, scVI

  Bishop-Laboratory/autoPLIER-analysis#54 · Filter by author millerh1 opened on Nov 9, 2022
  1

• Retry with KEGG

  Bishop-Laboratory/autoPLIER-analysis#53 · Filter by author millerh1 opened on Nov 9, 2022

• Testing AP on PBMC data with KEGG

  Bishop-Laboratory/autoPLIER-analysis#52 · Filter by author millerh1 opened on Sep 17, 2022
  1

  

• LV interpretability

  low-priority
  Bishop-Laboratory/autoPLIER-analysis#51 · Filter by author Julian-Borbeck opened on Jul 30, 2022
  2

• Experiment: Differentiation of HSCs

  Bishop-Laboratory/autoPLIER-analysis#49 · Filter by author millerh1 opened on Jul 16, 2022
  

• Could use this method unsupervised for cluster marker analysis

  low-priority
  Bishop-Laboratory/autoPLIER-analysis#48 · Filter by author millerh1 opened on Jun 4, 2022

• Get pathway contributions to classification

  low-priority
  Bishop-Laboratory/autoPLIER-analysis#47 · Filter by author millerh1 opened on Jun 4, 2022

• Plot ideas

  Bishop-Laboratory/autoPLIER-analysis#46 · Filter by author millerh1 opened on Apr 30, 2022

• Port Jupyter Notebooks to Colab

  Bishop-Laboratory/autoPLIER-analysis#45 · Filter by author millerh1 opened on Apr 30, 2022

• COVID analysis (biological story)

  manuscript
  Bishop-Laboratory/autoPLIER-analysis#44 · Filter by author millerh1 opened on Apr 16, 2022
  1

  

• Discussion points

  manuscript
  Bishop-Laboratory/autoPLIER-analysis#43 · Filter by author millerh1 opened on Apr 16, 2022

• GTEx experiments

  manuscript
  Bishop-Laboratory/autoPLIER-analysis#41 · Filter by author millerh1 opened on Apr 16, 2022
  2

  

• Experiment: MEF -> iPSCs testing

  biological-analysislow-priority
  Bishop-Laboratory/autoPLIER-analysis#26 · Filter by author millerh1 opened on Dec 28, 2021

• Initial maniscript: Distinctions from other methods

  Bishop-Laboratory/autoPLIER-analysis#24 · Filter by author millerh1 opened on Dec 28, 2021