feat(config): add lineageFields for all organisms to both prod and staging#1122
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feat(config): add lineageFields for all organisms to both prod and staging#1122
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…aging Adds lineageFields to the backend config for all organisms that expose lineage/clade filters on the website. These fields are used by the backend to validate lineage filters in collection objects. Fields were identified in two ways: 1. Fetching `<lapis-url>/llms.txt` for each organism and extracting fields annotated as "(STRING, lineage index generated)" — these were found for covid, mpox, rsvA, rsvB, cchf, and denv1–4. 2. Reading the frontend view files (e.g. h5n1.ts, h3n2.ts) for organisms where llms.txt returned no lineage index fields but the website still exposes a variant/clade selector — covering h5n1, h1n1pdm, h3n2, influenzaA, influenzaB, victoria, westNile, and measles. Summary of lineageFields added per organism: - covid (staging only, prod already had it): pangoLineage, nextcladePangoLineage - h5n1: clade - h1n1pdm: cladeHA, cladeNA - h3n2: cladeHA, cladeNA - influenzaA: subtypeHA, subtypeNA - influenzaB: lineageHA - victoria: cladeHA, cladeNA - mpox: lineage, clade - westNile: lineage - rsvA: lineage - rsvB: lineage - cchf: lineage_S - denv1–4: clade - measles: genotype Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Adds lineageFields to the backend config for all organisms that expose lineage/clade filters on the website. These fields are used by the backend to validate lineage filters in collection objects.
Fields were identified in two ways:
<lapis-url>/llms.txtfor each organism and extracting fields annotated as "(STRING, lineage index generated)" — these were found for covid, mpox, rsvA, rsvB, cchf, and denv1–4.Summary of lineageFields added per organism: