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GetOrganelle v1.8.0.1 fails with AssertionError during disentangling (embplant_pt)

Status: Open.

#390 In Kinggerm/GetOrganelle;

· sidrafatima0824-star opened on Apr 14, 2026

'NoneType' object has no attribute 'remove' and slimming failed!

Status: Open.

#388 In Kinggerm/GetOrganelle;

· zeyoguzhan opened on Feb 16, 2026

Disentangling AssertionError

Status: Open.

#384 In Kinggerm/GetOrganelle;

· lucky-riverstar opened on Dec 2, 2025

Negative base coverage

Status: Open.

#383 In Kinggerm/GetOrganelle;

· ulilautenschlager opened on Nov 7, 2025

error

Status: Open.

#381 In Kinggerm/GetOrganelle;

· ola051102 opened on Jul 23, 2025

Optical k-mer did help in one case but worse result in other

Status: Open.

#379 In Kinggerm/GetOrganelle;

· desmodus1984 opened on Jun 20, 2025

Clarification on --disentangle-df: How is the depth factor used in filtering?

Status: Open.

#378 In Kinggerm/GetOrganelle;

· microbpro-cat opened on Jun 20, 2025

Unexpectedly shorter mitogenome when using Trematoda-specific seed/label in GetOrganelle

Status: Open.

#377 In Kinggerm/GetOrganelle;

· microbpro-cat opened on Jun 20, 2025

Plant Mitochondria assembly get fastag but broken assembly without combined circular contig

Status: Open.

#374 In Kinggerm/GetOrganelle;

· rashedbtcu opened on May 17, 2025

Circular assembly fails with custom database, even though it works with the default animal_mt database

Status: Open.

#371 In Kinggerm/GetOrganelle;

· microbpro-cat opened on Apr 7, 2025

Problems in Assembling Embplant_pt within Plastome Genome by GetOrganelle v1.8.0.1: Data Scarcity, Assembly Disentangling Failures and AssertionError

Status: Open.

#370 In Kinggerm/GetOrganelle;

· rry-1 opened on Feb 25, 2025

Disentangling unsuccessful and only getting one (44kbp) scaffold

Status: Open.

#368 In Kinggerm/GetOrganelle;

· mvanda3 opened on Feb 6, 2025