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Transfer Learning over fitting for alternative proteases

Status: Open.

#818 In MannLabs/alphadia;

· snsipe opened on Jun 10, 2026

mzML input files missing in GUI? v 2.1.1. DEB

Status: Open.

#813 In MannLabs/alphadia;

· CINVESTAV-LABI opened on May 21, 2026

Synchro-PASEF configuration file

Status: Open.

#806 In MannLabs/alphadia;

· patrick-willems opened on Mar 10, 2026

precursor.mz.calibrated not reported

Status: Open.

#796 In MannLabs/alphadia;

· msproteomics opened on Feb 5, 2026

AlphaDIA for metaproteomics

Status: Open.

#794 In MannLabs/alphadia;

· smilanna opened on Jan 29, 2026

Unable to synchronously open file on hdf library from test data.

Status: Open.

#766 In MannLabs/alphadia;

· MiguelCos opened on Dec 9, 2025

ERROR: Can only use .str accessor with string values!

bugSomething isn't workingSomething isn't working

Status: Open.

#755 In MannLabs/alphadia;

· animesh opened on Nov 17, 2025

Regarding issues with out of memory

questionFurther information is requestedFurther information is requested

Status: Open.

#711 In MannLabs/alphadia;

· sdeva27468 opened on Oct 27, 2025

AlphaDIA sometimes returns empty pg.matrix.tsv when searching with very small libraries

Status: Open.

#432 In MannLabs/alphadia;

· vbrennsteiner opened on Jan 16, 2025

Multiplexing not working with library prediction

bugSomething isn't workingSomething isn't working

Status: Open.

#395 In MannLabs/alphadia;

· timheymann opened on Dec 9, 2024

multiplexDIA

enhancementNew feature or requestNew feature or request

Status: Open.

#385 In MannLabs/alphadia;

· Kokoushin opened on Nov 26, 2024

diaPasef: No objects to concatenate

bugSomething isn't workingSomething isn't working

Status: Open.

#383 In MannLabs/alphadia;

· rednaSander opened on Nov 25, 2024