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chore(main): release 1.4.0#29

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chore(main): release 1.4.0#29
github-actions[bot] wants to merge 1 commit intomainfrom
release-please--branches--main

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@github-actions github-actions bot commented Jan 2, 2026

🤖 I have created a release beep boop

1.4.0 (2026-03-09)

Features

  • add low-confidence site filtering (f447478)
  • remove demix module from rule core (#30) (cb01079)
  • use site quality filter to calculate evolutionary rate (#33) (29d75e5)

Bug Fixes

  • catch errors on AF-time correlation test (#39) (8025462)
  • consider masked sites for dN and dS calculation (#38) (ce47836)
  • deduplicate variants and handle missing annotation (#32) (c70dfe0)
  • init missing columns (#37) (fa5f624)
  • pin setuptools to avoid deprecation error in Snakemake 7 (395696c)
  • pin setuptools version to avoid deprecation error (#31) (395696c)

This PR was generated with Release Please. See documentation.

@github-actions github-actions bot force-pushed the release-please--branches--main branch from 05ca911 to fcff231 Compare January 12, 2026 15:48
@github-actions github-actions bot force-pushed the release-please--branches--main branch 5 times, most recently from 53a5f8c to bfa270b Compare February 11, 2026 12:28
@github-actions github-actions bot force-pushed the release-please--branches--main branch 2 times, most recently from dd985cc to 348d9eb Compare March 6, 2026 13:56
@github-actions github-actions bot force-pushed the release-please--branches--main branch from 348d9eb to df64e87 Compare March 9, 2026 14:00
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