AoU_Workshop

These are materials demonstrating PheWAS in the All of Us Researcher Workbench

To load these notebooks, create a new python notebook and add three cells with the following commands:

!wget https://github.com/PheWAS/AoU_Workshop/archive/refs/heads/main.zip

!unzip -j main.zip

!gsutil cp AMIA* $WORKSPACE_BUCKET/notebooks

This will download the notebooks and then save them to your workspace so you can view them.

Name		Name	Last commit message	Last commit date
AMIA_Exercise1-Extract_SNP.ipynb		AMIA_Exercise1-Extract_SNP.ipynb
AMIA_Exercise2-Plink_RAW_format.ipynb		AMIA_Exercise2-Plink_RAW_format.ipynb
AMIA_Exercise3-Create_Phecodes.ipynb		AMIA_Exercise3-Create_Phecodes.ipynb
AMIA_Exercise4-Parse_PCs.ipynb		AMIA_Exercise4-Parse_PCs.ipynb
AMIA_Exercise5-Covariates_and_BMI.ipynb		AMIA_Exercise5-Covariates_and_BMI.ipynb
AMIA_Exercise6-PheWAS_Analysis.ipynb		AMIA_Exercise6-PheWAS_Analysis.ipynb
README.md		README.md

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