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Default SuSiE L to 10 and greedy-L off - #1422

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gaow merged 1 commit into
StatFunGen:mainfrom
Yining97:rss-finemap-l-defaults
Sep 3, 2026
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Default SuSiE L to 10 and greedy-L off#1422
gaow merged 1 commit into
StatFunGen:mainfrom
Yining97:rss-finemap-l-defaults

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@Yining97

@Yining97 Yining97 commented Sep 3, 2026

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Pipeline defaults for the SuSiE fit:

  • --L from 20 to 10.
  • --L-greedy to none, so the greedy-L loop is off by default.

Both stay overridable — pass --L N or --L-greedy N (a positive integer turns greedy back on). Pairs with the pecotmr default change.

Validated end to end on chr21 with both changes applied: a full SoS run at the new defaults completes, passing the old values (--L 20 --L-greedy 5) reproduces the pre-change fit exactly (PIP diff 0), and the new defaults fit 10 effects with greedy off.

The pipeline now defaults --L to 10 (was 20) and --L-greedy to none, so the greedy-L loop is off by default. Both stay overridable: pass --L N or --L-greedy N. Pairs with the matching pecotmr default change.
@Yining97
Yining97 force-pushed the rss-finemap-l-defaults branch from e29e319 to 849a440 Compare September 3, 2026 19:12
@Yining97 Yining97 changed the title Default SuSiE L to 10 and let --L-greedy be disabled Default SuSiE L to 10 and greedy-L off Sep 3, 2026
@gaow
gaow merged commit 851ac83 into StatFunGen:main Sep 3, 2026
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@Yining97
Yining97 deleted the rss-finemap-l-defaults branch September 3, 2026 21:25
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2 participants