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Dockerfile fixes for matplotlib and cython modules #85

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Dockerfile fixes for matplotlib and cython modules #85

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b678d14
Update Ubuntu dependencies for matplotlib-2.0.0b1 #84
omsai Jun 11, 2016
0878bb3
Fix cython NoneType errors in #84
omsai Jun 11, 2016
475a8b7
Fix NumPy ABI compatibility runtime error for #84
omsai Jun 11, 2016
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8 changes: 6 additions & 2 deletions Dockerfile
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Expand Up @@ -19,8 +19,10 @@ RUN echo 'deb http://cran.rstudio.com/bin/linux/ubuntu trusty/' >> /etc/apt/sour
RUN apt-get update

# Install dependencies
RUN apt-get -y install git python-tables python-setuptools python-pip python-dev cython libhdf5-serial-dev r-base python-rpy2
RUN apt-get -y install git python-tables python-setuptools python-pip python-dev cython libhdf5-serial-dev r-base python-rpy2 libfreetype6-dev pkg-config

# Upgrade numpy
RUN easy_install --upgrade numpy
# Upgrade numexpr
RUN pip install numexpr --upgrade

Expand All @@ -29,7 +31,9 @@ RUN Rscript -e 'options("repos" = c(CRAN = "http://cran.rstudio.com/")); install

# Install poretools
RUN git clone https://github.com/arq5x/poretools /tmp/poretools
RUN cd /tmp/poretools && python setup.py install
WORKDIR /tmp/poretools
RUN pip install -r requirements.txt
RUN python setup.py install

############## INSTALLATION END ##############

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