Genetic_basis_drought is a repository for data related to the manuscript entitled "Connecting tree-ring phenotypes, genetic associations, and transcriptomics to decipher the genomic architecture of drought adaptation in a widespread conifer" published in Molecular Ecology (2021).

Raw data files: (1) The file GCAT_PG-RNA-3.9.18.fa is a fasta file including all transcripts assembled by P. Rigault from 2x250bp PE Illumina sequencing of a variety of tissues (embryos, needles, phelloderm, megagametophyte... ). The transcriptome was obtained using Gydle (R) Tools. (2) The file genotype_Depardieu_2020 is a text file containing genotypes of 1,473 trees and 6,153 SNPs. Genotypes are coded as follow: 0 when the individual is homozygous for the first allele, 1 when the individual is heterozygous and 2 when the individual is homozygous for the second allele.

R scripts (1)