Issues

• XamFlow EllipsoidFactor

  bonej-org/BoneJ2#425 · Filter by author mdoube opened on Jun 25, 2026

• omni raw binary is (0,1), need it as (0,255) for ImageJ

  bonej-org/BoneJ2#412 · Filter by author mdoube opened on Jun 16, 2026

• omni file -> Dataset reader

  bonej-org/BoneJ2#410 · Filter by author mdoube opened on Jun 14, 2026
  2

• XamFlow integration

  enhancement
  bonej-org/BoneJ2#409 · Filter by author mdoube opened on Jun 14, 2026
  

• Use @Parameter callbacks for GUI interactivity

  bonej-org/BoneJ2#403 · Filter by author mdoube opened on Jun 2, 2026

• Pixel-weighted moments in Slice Geometry

  bonej-org/BoneJ2#392 · Filter by author mdoube opened on Jan 6, 2026
  

• Test failure in RoiManagerUtilTests

  bug
  bonej-org/BoneJ2#378 · Filter by author mdoube opened on Sep 1, 2025
  3

  

• Ellipsoid factor blows up if input image is bigger than Integer.MAX_VALUE pixels

  bonej-org/BoneJ2#335 · Filter by author mdoube opened on Jul 6, 2023
  

• Update docs to contain recent changes

  bonej-org/BoneJ2#334 · Filter by author alessandrofelder opened on Jun 26, 2023
  

• Implement Fast Local Thickness

  enhancement
  bonej-org/BoneJ2#331 · Filter by author mdoube opened on Jun 8, 2023
  

• BoneJ2 does not calculate volume fraction of interpolated ROIs in DICOM files

  bonej-org/BoneJ2#327 · Filter by author giogo599 opened on Apr 13, 2023
  2

• Migrate analytics from Universal to GA4

  bonej-org/BoneJ2#315 · Filter by author mdoube opened on Apr 20, 2022
  1

• Add 3-3-2 surface colour regime so that 3D surfaces match 2D particle default LUT

  bugenhancement
  bonej-org/BoneJ2#298 · Filter by author mdoube opened on Apr 15, 2021
  1

  

• Move user documentation links from imagej.net/BoneJ to https://imagej.net/plugins/bonej

  enhancement
  bonej-org/BoneJ2#295 · Filter by author mdoube opened on Mar 24, 2021
  10

  

• Reinstate a negative test to check that the format exception is caught in AnalyzeSkeletonWrapper

  bonej-org/BoneJ2#275 · Filter by author alessandrofelder opened on Nov 12, 2020
  1

• BoneJ skeleton analysis issue

  bonej-org/BoneJ2#270 · Filter by author mafsousa opened on Jul 22, 2020
  1

• Ellipsoid Factor throws a Null Pointer Exception when other images are open

  bug
  bonej-org/BoneJ2#269 · Filter by author mdoube opened on Jul 1, 2020
  2

  

• EF default output is way too verbose.

  enhancement
  bonej-org/BoneJ2#268 · Filter by author mdoube opened on Jun 18, 2020
  2

  

• Ellipsoid factor averaging over several runs should re-use resources

  bonej-org/BoneJ2#266 · Filter by author mdoube opened on Jun 18, 2020
  

• Surface Area complains that axis calibrations are different when they are the same

  bug
  bonej-org/BoneJ2#260 · Filter by author mdoube opened on Jun 11, 2020
  3

  

• Skeleton plugins might be uneccesarily duplicated

  enhancement
  bonej-org/BoneJ2#258 · Filter by author mdoube opened on Jun 8, 2020
  

• Use LoopBuilder to multithread Modern plugins

  enhancement
  bonej-org/BoneJ2#252 · Filter by author mdoube opened on May 14, 2020
  4

  

• Hyperstack results sould have non-spatial dimensions logged in their own Table columns

  enhancement
  bonej-org/BoneJ2#251 · Filter by author mdoube opened on May 14, 2020

• Anisotropy performance fluctuates wildly

  enhancement
  bonej-org/BoneJ2#241 · Filter by author rimadoma opened on May 6, 2020
  2

• Use new calibrated surface meshing Op

  enhancement
  bonej-org/BoneJ2#234 · Filter by author mdoube opened on Apr 27, 2020