ADR 004: Promote Src/java to repository root and other changes

[antvaset]

The second step of ADR 004:

• Move Src/cql-lm/schema to schemas
• Move Src/cql-lm/uml to schemas/uml
• Move Src/grammar to grammar
• Move Src/java/* to repository root
  • Merge Src/java/.vscode/settings.json into existing .vscode/settings.json in the repository root
  • Merge Src/java/README.md into existing README.md in the repository root
• Move Src/js to js
• Move Examples toexamples
• Update relative paths that relied on the old directory structure
• Update the broken Maven Central badge in the main README.md along the way and add the npm package badge

[github-actions]

Related Issues

The following open issues may be related to this PR:

Issue	Title	Score	Matched Terms
#1365	Deprecate SearchInfo.type element	40	"com cqframework", "cqframework clinical", "src cql", "https github", "language blob", "github com", "cql schema", "quality language", "clinical quality", language, cqframework, github, src, quality, schema, json, com, blob, schemas, https, cql, clinical
#455	Ratio Literal Can't Reference Quantity Expression Values	38	"com cqframework", "cqframework clinical", "src cql", "https github", "language blob", "github com", "cql schema", "quality language", "clinical quality", language, cqframework, github, src, quality, schema, com, blob, https, cql, clinical
#1287	Revisit CQL Engine and Result APIs	38	"src java", "com cqframework", "cqframework clinical", "https github", "language blob", "github com", "quality language", "clinical quality", step, language, cqframework, github, java, along, src, quality, com, blob, main, https, cql, clinical
#765	Cql-to-elm Jackson dependency: Move CqlTranslatorOptionsMapper to a module?	37	"src java", "com cqframework", "cqframework clinical", "https github", "language blob", "github com", "quality language", "clinical quality", language, cqframework, github, java, src, quality, com, blob, move, main, https, cql, clinical
#1700	Loading libraries from intermediary forms	37	"src java", "com cqframework", "cqframework clinical", "https github", "github com", "main src", "quality language", "clinical quality", language, cqframework, github, examples, java, src, quality, json, com, main, https, cql, clinical

Tip: If this PR addresses any of these issues, please link them using Closes #NNN or Refs #NNN in the PR description.

[github-actions]

Formatting check succeeded!

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 68.75%. Comparing base (a266278) to head (f5ff261).

Additional details and impacted files

@@            Coverage Diff            @@
##               main    #1797   +/-   ##
=========================================
  Coverage     68.75%   68.75%           
  Complexity     1699     1699           
=========================================
  Files           536      536           
  Lines         30559    30559           
  Branches       6988     6988           
=========================================
  Hits          21011    21011           
  Misses         6994     6994           
  Partials       2554     2554           

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[c-schuler]

Couple of possible broken links in README.

Also noticed some references to previous Src/... paths in ExampleELMLibrary.xml and v4-to-v5-migration.md.

No blocking issues though.

Nice work!

[antvaset]

Thanks @c-schuler and @JPercival I've fixed the Src/... references in the example XML libraries and migration docs.

[sonarqubecloud]

Quality Gate failed

Failed conditions
66.5% Coverage on New Code (required ≥ 80%)
C Security Rating on New Code (required ≥ A)

See analysis details on SonarQube Cloud

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