Add JSONB distributions column and batch retrieval for genomicdist#110
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Add JSONB distributions column and batch retrieval for genomicdist#110sanghoonio wants to merge 3 commits intomasterfrom
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…pport Add a `distributions` JSONB column to `bed_stats` for storing full distribution arrays from gtars genomicdist output. Filter bedset statistics aggregation to only numeric columns so AVG/STDDEV skip the new JSONB field. Add `get_batch()` method for efficient multi-ID bed record retrieval. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Adding a nullable JSONB column is safe with a manual Also, didn't have the docker container set up to test fully. |
- Remove S3 upload calls from bed add/update paths; retain S3 delete for legacy object cleanup - Add aggregation module with collection-level stat computation - Replace BedSetPlots with BedSetStats backed by bedset_stats JSONB column - Remove _calculate_statistics and get_plots from bedsets - Add distributions JSONB column to Bed table with batch retrieval - Add get_batch and aggregate_collection to bedfile agent - Thread distributions param through get_stats Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Add a
distributionsJSONB column tobed_statsfor storing full distribution arrays from gtars genomicdist output. Filter bedset statistics aggregation to only numeric columns so AVG/STDDEV skip the new JSONB field. Addget_batch()method for efficient multi-ID bed record retrieval.Changes:
TODO:
__version__.pyfile