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Testing to see if current linkml fails on 3.14
RobertJCarroll
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It's not building for me locally, I'm getting the following stack. I didn't do much further testing.
PS C:\Users\carrolrj\Documents\include-access-model> just test
uv run gen-project --config-file config.yaml -d tmp src/include_access_model/schema/include_access_model.yaml
Traceback (most recent call last):
File "", line 198, in _run_module_as_main
File "", line 88, in run_code
File "C:\Users\carrolrj\Documents\include-access-model.venv\Scripts\gen-project.exe_main.py", line 10, in
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\click\core.py", line 1569, in call
return self.main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\click\core.py", line 1490, in main
rv = self.invoke(ctx)
^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\click\core.py", line 1353, in invoke
return ctx.invoke(self.callback, **ctx.params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\click\core.py", line 907, in invoke
return callback(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\generators\projectgen.py", line 249, in cli
gen.generate(yamlfile, project_config)
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\generators\projectgen.py", line 131, in generate
gen = gen_cls(local_path, **all_gen_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\utils\deprecation.py", line 361, in new_init
original_init(self, *args, **kwargs)
File "", line 43, in init
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\generators\jsonldcontextgen.py", line 93, in post_init
super().post_init()
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\utils\generator.py", line 208, in post_init
self._initialize_using_schemaloader(schema)
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\utils\generator.py", line 259, in _initialize_using_schemaloader
loader.resolve()
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\utils\schemaloader.py", line 157, in resolve
import_schemadefinition = load_raw_schema(
^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml\utils\rawloader.py", line 79, in load_raw_schema
schema = yaml_loader.load(
^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml_runtime\loaders\loader_root.py", line 82, in load
results = self.load_any(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml_runtime\loaders\yaml_loader.py", line 49, in load_any
return self._construct_target_class(data_as_dict, target_class)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\carrolrj\Documents\include-access-model.venv\Lib\site-packages\linkml_runtime\loaders\loader_root.py", line 160, in _construct_target_class
raise ValueError(msg)
ValueError: Unexpected type common_access_model-0.0.7.yaml
error: Recipe_test-schemafailed on line 187 with exit code 1
* Remove reference to Kids First * Update imports with versioned model * Fixed issue with slots table in docs and linkml 1.11
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Ok, it's building for me now, thank you. I am seeing these deprecation warnings now, too, but I assume that's a separate fix:
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