Issues

• Process stalled when running make_prg on a set of fasta file

  iqbal-lab-org/make_prg#70 · Filter by author mthang opened on Jun 26, 2025

• Ignore Ns that might have slipped through when updating PRGs

  iqbal-lab-org/make_prg#58 · Filter by author leoisl opened on Jun 7, 2023
  4

• segfaulting when building from_msa

  iqbal-lab-org/make_prg#57 · Filter by author iqbal-lab opened on May 28, 2023
  6

• Strange difference in overlapping positions between make_prg versions

  iqbal-lab-org/make_prg#55 · Filter by author mbhall88 opened on Dec 13, 2022
  11

• Add --update-method to make_prg update

  iqbal-lab-org/make_prg#51 · Filter by author leoisl opened on Nov 30, 2022
  1

• Copy-on-write might not be efficient in python

  iqbal-lab-org/make_prg#47 · Filter by author leoisl opened on Nov 29, 2022

• Accept multiple suffixes for option -s / --suffix

  iqbal-lab-org/make_prg#39 · Filter by author leoisl opened on Nov 22, 2022

• Indels can cause spurious site production

  bug
  iqbal-lab-org/make_prg#27 · Filter by author bricoletc opened on Oct 5, 2021
  2

  

• GFA format and ML path format

  iqbal-lab-org/make_prg#23 · Filter by author bricoletc opened on Mar 5, 2021
  1

• Stop producing empty alleles

  iqbal-lab-org/make_prg#17 · Filter by author bricoletc opened on Aug 11, 2020
  2

  

• Ambiguous path production

  iqbal-lab-org/make_prg#15 · Filter by author bricoletc opened on Jun 14, 2020
  55