V2.0 update

.github/workflows/clf.yml

@@ -1,4 +1,4 @@
-name: autobuild_clf
+name: ci_classification
 on:
   pull_request:
     branches:
@@ -9,42 +9,57 @@ on:
       - master
       - 'V**'
       - dev
+
 env:
   GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }}
   REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
 jobs:
-  build:
+  test-classification:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
-          architecture: 'x64'
-      - uses: actions/setup-node@v3
+          python-version: '3.11'
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+
+      - uses: actions/setup-node@v4
         with:
-          node-version: '16'
-      - uses: iterative/setup-cml@v1
-      - name: Display Python version
-        run: python -c "import sys; print(sys.version)"
+          node-version: '20'
+
+      - uses: iterative/setup-cml@v3
+
+      - name: Cache uv packages
+        uses: actions/cache@v4
+        with:
+          path: ~/.cache/uv
+          key: ${{ runner.os }}-uv-clf-${{ hashFiles('pyproject.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-uv-clf-
+
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install torch torchvision --extra-index-url https://download.pytorch.org/whl/cpu
-          pip install -e '.[dev,cv,cv_classification]'
-          pip install dvc dvc-gdrive
+          uv pip install --system torch torchvision --index-url https://download.pytorch.org/whl/cpu
+          uv pip install --system -e '.[dev,cv,cv_classification]'
+          uv pip install --system dvc dvc-gdrive
           npm install -g markdown-table-cli
+
       - name: Download data
         run: |
           echo "$GDRIVE_CREDENTIALS_DATA" > credentials.json
           dvc remote modify gdrive --local gdrive_user_credentials_file ./credentials.json
           dvc pull
           ls -la samples
+
       - name: Test with pytest
         run: |
-          pytest tests/classification --capture=no
+          uv run pytest tests/classification --capture=no
+
       - name: Display report
         run: |
           echo "# Classification Report" > report.md
@@ -53,7 +68,7 @@ jobs:
           echo "#### Confusion Matrix" >> report.md
           echo "![Confusion Matrix](runs/pytest_clf/Validation/cfm.png)" >> report.md
           echo "#### Errorcases" >> report.md
-          echo "![Confusion Matrix](runs/pytest_clf/Validation/errorcases.png)" >> report.md
+          echo "![Errorcases](runs/pytest_clf/Validation/errorcases.png)" >> report.md
           echo "------------------" >> report.md
           echo "#### Hyperparameters Tuning" >> report.md
           echo "Leaderboard" >> report.md

.github/workflows/docker.yml

@@ -1,4 +1,4 @@
-name: autobuild_docker
+name: ci_docker
 on:
   pull_request:
     branches:
@@ -10,26 +10,31 @@ env:
   DOCKERHUB_TAG: kaylode/theseus:latest
 
 jobs:
-  run:
+  build-and-test:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
-          architecture: 'x64'
-      - uses: iterative/setup-cml@v1
+          python-version: '3.11'
+
+      - uses: iterative/setup-cml@v3
       - uses: iterative/setup-dvc@v1
+
       - name: Set up QEMU
-        uses: docker/setup-qemu-action@v2
+        uses: docker/setup-qemu-action@v3
+
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v2
+        uses: docker/setup-buildx-action@v3
+
       - name: Create credentials file
         run: |
           echo "$GDRIVE_CREDENTIALS_DATA" > credentials.json
+
       - name: Build Dockerfile
-        uses: docker/build-push-action@v4
+        uses: docker/build-push-action@v6
         with:
           context: .
           tags: ${{ env.DOCKERHUB_TAG }}
@@ -40,10 +45,10 @@ jobs:
       - name: Free up space
         run: |
           docker system prune -f
-          sudo rm -rf "/usr/local/share/boost"
+          sudo rm -rf /usr/local/share/boost
           sudo rm -rf "$AGENT_TOOLSDIRECTORY"
 
-      - name: Docker name
+      - name: Load Docker image
         run: |
           docker load -i ${{ github.workspace }}/image.tar
           docker image inspect ${{ env.DOCKERHUB_TAG }}
@@ -61,16 +66,16 @@ jobs:
               pytest tests --capture=no
 
       - name: Log in to Docker Hub
-        uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a
+        uses: docker/login-action@v3
         with:
           username: ${{ secrets.DOCKER_USERNAME }}
           password: ${{ secrets.DOCKER_PASSWORD }}
 
       - name: Push image to DockerHub
         run: |
-          docker push --all-tags
+          docker push ${{ env.DOCKERHUB_TAG }}
 
-      - name: where am I
+      - name: Debug workspace
         run: |
           pwd
           ls -la

.github/workflows/lint.yml

@@ -0,0 +1,36 @@
+name: lint
+on:
+  pull_request:
+    branches:
+      - master
+      - dev
+  push:
+    branches:
+      - master
+      - dev
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+
+      - name: Install dependencies
+        run: |
+          uv pip install --system ruff
+
+      - name: Ruff check
+        run: |
+          ruff check theseus/ tests/
+
+      - name: Ruff format check
+        run: |
+          ruff format --check theseus/ tests/

.github/workflows/release.yml

@@ -0,0 +1,39 @@
+name: release
+on:
+  push:
+    tags:
+      - 'v*'
+
+permissions:
+  contents: read
+  id-token: write
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/theseus
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+
+      - name: Install build dependencies
+        run: |
+          uv pip install --system build
+
+      - name: Build package
+        run: |
+          python -m build
+
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          skip-existing: true

.github/workflows/segm.yml

@@ -1,4 +1,4 @@
-name: autobuild_segm
+name: ci_segmentation
 on:
   pull_request:
     branches:
@@ -9,42 +9,57 @@ on:
       - master
       - 'V**'
       - dev
+
 env:
   GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }}
   REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
 jobs:
-  build:
+  test-segmentation:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
-          architecture: 'x64'
-      - uses: actions/setup-node@v3
+          python-version: '3.11'
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+
+      - uses: actions/setup-node@v4
         with:
-          node-version: '16'
-      - uses: iterative/setup-cml@v1
-      - name: Display Python version
-        run: python -c "import sys; print(sys.version)"
+          node-version: '20'
+
+      - uses: iterative/setup-cml@v3
+
+      - name: Cache uv packages
+        uses: actions/cache@v4
+        with:
+          path: ~/.cache/uv
+          key: ${{ runner.os }}-uv-segm-${{ hashFiles('pyproject.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-uv-segm-
+
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install torch torchvision --extra-index-url https://download.pytorch.org/whl/cpu
-          pip install -e '.[dev,cv,cv_semantic]'
-          pip install dvc dvc-gdrive
+          uv pip install --system torch torchvision --index-url https://download.pytorch.org/whl/cpu
+          uv pip install --system -e '.[dev,cv,cv_semantic]'
+          uv pip install --system dvc dvc-gdrive
           npm install -g markdown-table-cli
+
       - name: Download data
         run: |
           echo "$GDRIVE_CREDENTIALS_DATA" > credentials.json
           dvc remote modify gdrive --local gdrive_user_credentials_file ./credentials.json
           dvc pull
           ls -la samples
+
       - name: Test with pytest
         run: |
-          pytest tests/semantic --capture=no
+          uv run pytest tests/semantic --capture=no
+
       - name: Display report
         run: |
           echo "# Semantic Report" > report.md