[0.4.0] add support for Needleman-Wunsch with scores; update Python version support#23

Merged

andrew-titus merged 21 commits into

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Apr 13, 2026

Commits on Apr 6, 2026

[0.4.0] add support for Needleman-Wunsch with scores; update Python version support

Drew Titus
and
claude
committed
Lint
Drew Titus
committed
Fix lint again?
Drew Titus
committed
Replace legacy linting toolchain with ruff and mypy

Drew Titus
and
claude
committed
Modernize linting/testing setup
Drew Titus
committed

Commits on Apr 7, 2026

Simplify linter matrix
Drew Titus
committed
Fix incorrect expected values in needleman_wunsch_with_scores tests

Drew Titus
and
claude
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Update CHANGELOG and README for v0.4.0

Drew Titus
and
claude
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Update Cargo for pyo3 security vuln and 2024 Rust
Drew Titus
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Update CHANGELOG for PyO3/Cargo changes

Drew Titus
and
claude
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Revert Rust edition to 2021, drop maturin extension-module feature, update CHANGELOG

Drew Titus
and
claude
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Update pymodule signature for PyO3 0.28 Bound API

Drew Titus
and
claude
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Lower stable ABI minimum to Python 3.10 to match requires-python

Drew Titus
and
claude
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Refactor lint script and Rust NW code; update CHANGELOG

Drew Titus
and
claude
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Lint; update codecov config
Drew Titus
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Add perf test for needleman_wunsch_with_scores

Drew Titus
and
claude
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Update perf range for CI
Drew Titus
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Lower trials for NW-with-scores
Drew Titus
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Adjust mem trials as well
Drew Titus
committed

Commits on Apr 13, 2026

Change gap from kwarg to arg
Drew Titus
committed
Simplify indexing
Drew Titus
committed