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XA: and SA: tags liftover

enhancementNew feature or requestNew feature or request

Status: Open.

#88 In milkschen/leviosam2;

· zoldrax opened on Aug 7, 2025

Unexpected liftover behavior when lifting PacBio long genomic reads between two haplotypes

Status: Open.

#87 In milkschen/leviosam2;

· minkinaa opened on Apr 18, 2025

Picard ValidateSamFile halts for 100 Mate CIGAR String (MC Attribute) present for a read whose mate is unmapped Error after lifting from chm13v2 to hg38

Status: Open.

#71 In milkschen/leviosam2;

· yunkaig opened on Apr 10, 2024

Possible bug in leviosam2.py

Status: Open.

#70 In milkschen/leviosam2;

· Heather1999 opened on Feb 22, 2024

Leviosam2 binary and python script questions

Status: Open.

#64 In milkschen/leviosam2;

· insilicool opened on Jan 16, 2024