This repository contains data, scripts, and figures used in the preparation of a research article devoted to differences in mitochondrial DNA mutational spectra between termites and cockroaches.
- data/ — Contains tabular datasets used in the analysis, including processed data for termites and cockroaches.
- code/ — Contains Jupyter notebooks and analysis scripts used for data processing, statistical analysis, and figure generation.
- figures/ — Contains figures and graphical outputs generated for the manuscript.
The repository serves as a supplementary storage location for datasets and analytical code associated with the study of mitochondrial DNA mutational spectra in termites and cockroaches.
Primary processing of raw sequencing and mutational data is performed in the original project repository:
Original repository: https://github.com/mitoclub/mtdna-mutspec-insecta
Draft version of the manuscript:
Article draft: https://docs.google.com/document/d/185HI9UHWSG4jsAigra7D0Auth3Y7H33XEZkLhF1MIbE/edit?usp=sharing Reproducibility
All analyses presented in the manuscript can be reproduced using the notebooks and datasets provided in this repository.
Requirements
The analysis was performed primarily using Python and Jupyter Notebook environments. Specific package requirements are documented within individual notebooks where applicable.