Issues · msberends/AMR · GitHub

Code TODO Tracker
#231 · msberends opened on Sep 3, 2025
1

Labels Milestones New issue

Improve `interpretive_rules()`

#268

· msberends opened

on Mar 28, 2026

·

Update and check WHONET vignette

#258

· msberends opened

on Feb 11, 2026

·

Include S. argenteus (and others) under S. aureus (complex) in `as.mo()`

requires thinking

#248

· Ger-JanF opened

on Jan 14, 2026

·

Scientific reference of microorganisms: take latest instead of first

#241

· msberends opened

on Oct 2, 2025

·

Renew `microorganisms` data set

#240

· msberends opened

on Oct 1, 2025

·

`as.sir()`: Improve support for custom breakpoint data

#239

· WGustafsson opened

on Oct 1, 2025

·

Convert all S3 to S7?

#238

· msberends opened

on Sep 19, 2025

Incorporate NARMS breakpoints

#237

· befriendabacterium opened

on Sep 12, 2025

·

Add antibiogram for MICs

#203

· msberends opened

on Apr 25, 2025

·

Adding CLSI data for intrinsic resistances

#199

· ConnorChato opened

on Mar 27, 2025

·

For breakpoints, allow `NS` (non-susceptible) as a possible outcome of `as.sir()`

#196

· msberends opened

on Mar 14, 2025

·

Adding custom groups (not currently functional with `add_custom_microbials()` or built-in data objects)

#189

· ConnorChato opened

on Feb 12, 2025

·