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Fix linting from a comment

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fix-linting.yml
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Remove vulnerable PR-comment artifact pattern Fix linting from a comment #158: Issue comment #250 (comment) created by nf-core-bot
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Add publication link Fix linting from a comment #157: Issue comment #239 (comment) created by luisas
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Merging template updates Fix linting from a comment #156: Issue comment #244 (comment) created by JoseEspinosa
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Merging-template-4.0.2 Fix linting from a comment #155: Issue comment #248 (comment) created by JoseEspinosa
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Add palette with more colours in Shiny App Fix linting from a comment #154: Issue comment #211 (comment) created by luisas
Skipped
Skipped
Fasta test file containing seatoxin reference sequences incorrectly named Fix linting from a comment #153: Issue comment #242 (comment) created by luisas
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Put all default parameters to false, change skip for run when necessary Fix linting from a comment #152: Issue comment #209 (comment) created by luisas
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Add output csv with only the datasets that have succeeded for all aligners Fix linting from a comment #151: Issue comment #171 (comment) created by luisas
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Important! Template update for nf-core/tools v3.3.2 Fix linting from a comment #150: Issue comment #235 (comment) created by nf-core-bot
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Update nf-co2footprint plugin version to 1.0.0 Fix linting from a comment #149: Issue comment #241 (comment) created by nf-core-bot
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Update citation Fix linting from a comment #148: Issue comment #240 (comment) created by nf-core-bot
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