ocs-docker

Collection of Docker Images for open case studies

Repository Function

Always use a branch to open a pull request to add Dockerfiles to this repository

The workflow files to support the automatic actions of this repository are in the .github/workflows directory:

• action.yml: general action specification for building and pushing an image to DockerHub
• manual_dispatch.yml: action specification for manually building and pushing an image to DockerHub
• merge.yml: edit to include any new images
• pull_request.yml: edit to include any new images

Case Studies Directories

Always put your Dockerfiles within case study specific directories and edit the README file to describe what each Dockerfile does, how each Dockerfile relates to named images built and pushed to DockerHub, and who the maintainer within the org is.

ocs-bio-containers

Maintainer: kweav

• activity: the Dockerfile is adjusted to add a package (patchwork) for the data wrangling part of the case study
  • Image name: ocs-bio-containers-wrangling
  • On Docker Hub: yes (7/30/26) bioocs org, tag main
• base: the Dockerfile used throughout the beginning of the case study with various data visualization packages as well as ggpubr, but not patchwork yet.
  • Image name: ocs-bio-containers-base
  • On Docker Hub: yes (7/30/26) bioocs org, tag main and previously tag dev (7/21/26)
• continued-learning: The Dockerfile adjusted to add ggrepel to the activity image.
  • Image name: ocs-bio-containers-cont
  • On Docker Hub: yes (7/30/26) bioocs org, tag main