Hello,
I'm writing to ask for help with a persistent issue I'm encountering while building the VariantValidator Docker container.
I really hope you can help me with this issue. I've tried several approaches, but the error persists during the Docker build process. The absence of the default.ini file seems to be a known issue with VariantValidator, but none of the standard solutions work in my case. I would appreciate any suggestions you might have. I've been using the Dockerfile provided on GitHub, as well as the version you recommended for a similar issue.
Thank you in advance for your time and assistance
---> Removed intermediate container a6ac1ee6f0fc
---> 450381df177f
Step 10/13 : RUN python -m VariantValidator.bin.setup_lovd_syntax_checker
---> Running in 8d293d498221
-----------------------------
| Welcome to VariantValidator |
-----------------------------
Traceback (most recent call last):
File "", line 189, in _run_module_as_main
File "", line 112, in _get_module_details
File "/usr/local/lib/python3.12/site-packages/VariantValidator/init.py", line 1, in
from . import configure
File "/usr/local/lib/python3.12/site-packages/VariantValidator/configure.py", line 36, in
shutil.copyfile(os.path.join(os.path.dirname(os.path.dirname(os.path.realpath(file))), 'configuration',
File "/usr/local/lib/python3.12/shutil.py", line 260, in copyfile
with open(src, 'rb') as fsrc:
^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/lib/python3.12/site-packages/configuration/default.ini'
Hello,
I'm writing to ask for help with a persistent issue I'm encountering while building the VariantValidator Docker container.
I really hope you can help me with this issue. I've tried several approaches, but the error persists during the Docker build process. The absence of the default.ini file seems to be a known issue with VariantValidator, but none of the standard solutions work in my case. I would appreciate any suggestions you might have. I've been using the Dockerfile provided on GitHub, as well as the version you recommended for a similar issue.
Thank you in advance for your time and assistance
---> Removed intermediate container a6ac1ee6f0fc
---> 450381df177f
Step 10/13 : RUN python -m VariantValidator.bin.setup_lovd_syntax_checker
---> Running in 8d293d498221
-----------------------------
| Welcome to VariantValidator |
-----------------------------
Traceback (most recent call last):
File "", line 189, in _run_module_as_main
File "", line 112, in _get_module_details
File "/usr/local/lib/python3.12/site-packages/VariantValidator/init.py", line 1, in
from . import configure
File "/usr/local/lib/python3.12/site-packages/VariantValidator/configure.py", line 36, in
shutil.copyfile(os.path.join(os.path.dirname(os.path.dirname(os.path.realpath(file))), 'configuration',
File "/usr/local/lib/python3.12/shutil.py", line 260, in copyfile
with open(src, 'rb') as fsrc:
^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/lib/python3.12/site-packages/configuration/default.ini'