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    7 repositories

    • HmmUFOtu

      Public
      An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
      hmmphylogeneticsmixture-model
      hmmphylogeneticsmixture-modeldirichlet-process-mixturestaxonomy-assignmentotuphylogenetic-placementjplace
      C++
      •
      GNU General Public License v3.0
      •9•11•11•1•Updated Mar 16, 2026Mar 16, 2026

    • IowaWound

      Public
      Iowa Wound Pain analyses 2020
      R
      •0•0•0•0•Updated May 15, 2024May 15, 2024

    • DFUStrainsWGS

      Public
      This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)
      Shell
      •0•0•0•0•Updated Dec 17, 2023Dec 17, 2023

    • Staphyloxanthin

      Public
      Code repository for Staphyloxanthin paper
      R
      •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • AlignerBoost

      Public
      AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
      Java
      •2•11•2•0•Updated Mar 1, 2022Mar 1, 2022

    • EAGenomeAssembly

      Public
      Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 7, 2022Feb 7, 2022

    • MSGseqTK

      Public
      A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 18, 2022Jan 18, 2022
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