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@include-dcc INCLUDE Data Coordinating Center

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    36 repositories

    • term-weaver

      Public
      Materialize LinkML enumerations
      Python
      •0•0•2•1•Updated Aug 14, 2026Aug 14, 2026

    • common-access-model

      Public
      Shared warehouse model for research data.
      Python
      •
      MIT License
      •0•1•11•1•Updated Aug 14, 2026Aug 14, 2026

    • include-dbt-sandbox

      Public
      sandbox for prototyping dbt work
      Shell
      •0•0•7•1•Updated Aug 12, 2026Aug 12, 2026

    • cam-expanded-enums

      Public
      Python
      •
      MIT License
      •0•0•0•2•Updated Aug 5, 2026Aug 5, 2026

    • cam-source-enums

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Aug 1, 2026Aug 1, 2026

    • include-access-model

      Public
      INCLUDE specific build of the Common Access Model
      Just
      •
      MIT License
      •0•0•0•3•Updated Aug 1, 2026Aug 1, 2026

    • include-portal-ui

      Public
      TypeScript
      •
      Apache License 2.0
      •2•0•0•2•Updated Jul 22, 2026Jul 22, 2026

    • include-model-forge

      Public
      GLSL
      •
      Apache License 2.0
      •0•1•1•1•Updated May 1, 2026May 1, 2026

    • include-linkml

      Public
      LinkML Schema for INCLUDE DCC
      Python
      •
      MIT License
      •4•3•48•1•Updated Apr 30, 2026Apr 30, 2026

    • whistle-ingest-modular

      Public
      Python
      •0•0•3•0•Updated Apr 14, 2026Apr 14, 2026

    • unwrangle

      Public
      Python library for interacting with Dewrangler and other ID related systems for use with INCLUDE ETL
      Python
      •0•1•3•1•Updated Dec 3, 2025Dec 3, 2025

    • harmonica

      Public
      Tooling to harmonize condition data to ontology terms.
      Python
      •
      MIT License
      •0•1•7•0•Updated Oct 3, 2025Oct 3, 2025

    • smolder

      Public
      Python
      •0•0•1•1•Updated Jul 24, 2025Jul 24, 2025

    • include-app-drs-registration

      Public
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • include-dbt-kids-first

      Public
      The "Gabriella Miller Kids First Pediatric Research Program" data harmonization dbt pipeline.
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • Data-Harmonization-and-QC-Team

      Public
      Repository for tracking data harmonization and quality control efforts for the INCLUDE Data Coordinating Center's Data Management Core (DMC).
      Jupyter Notebook
      •0•1•11•0•Updated Jun 5, 2025Jun 5, 2025

    • harmonium

      Public
      Human Guided Data Harmonization
      0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • whistle-ingest-linkml

      Public
      Whistle ingest based on the linkml model
      Python
      •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

    • include-fhir-access

      Public
      Overview of how users might access the INCLUDE FHIR servers
      0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • ontology_mappings

      Public
      Code and resources for handling ontology mappings
      Jupyter Notebook
      •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • include-users-api

      Public archive
      API to manage Include users
      TypeScript
      •
      Apache License 2.0
      •0•0•0•25•Updated Aug 17, 2023Aug 17, 2023

    • data-models

      Public
      Data models for INCLUDE Data Curator app
      1•1•0•0•Updated May 10, 2023May 10, 2023

    • DMC_V3_Roadmap

      Public
      Board for May Release Roadmap
      0•0•9•0•Updated Apr 24, 2023Apr 24, 2023

    • data_curator

      Public
      Data Ingest Shiny App
      R
      •
      Apache License 2.0
      •21•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • DMC_v3_tasks

      Public
      Issues for DMC v3 project board
      0•0•30•0•Updated Jan 19, 2023Jan 19, 2023

    • inc-portal-model

      Public
      Portal model Whistler Project to ETL include data into FHIR
      Python
      •0•0•6•0•Updated Nov 3, 2022Nov 3, 2022

    • ds-connect-whistle

      Public
      Whistle projector for ingesting DS-Connect into FHIR
      Python
      •0•0•3•0•Updated Jul 28, 2022Jul 28, 2022

    • htp-whistle

      Public
      Whistle projections for ingesting HTP data into FHIR
      0•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • include-keyckloak-ext

      Public archive
      Include Keycloak Extension
      Java
      •0•0•0•0•Updated Mar 23, 2022Mar 23, 2022

    • FHIR-Utils

      Public
      Scripts used to help with ingestion into FHIR for various datasets
      Python
      •0•0•0•0•Updated Mar 7, 2022Mar 7, 2022
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