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1. RNAseq-Nextflow-Pipeline RNAseq-Nextflow-Pipeline Public

   A comprehensive Nextflow pipeline for RNA-seq data analysis, encompassing quality control, read alignment, quantification, and differential expression analysis.

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2. ATACseq-Nextflow-Pipeline ATACseq-Nextflow-Pipeline Public

   A reproducible Nextflow pipeline for ATAC-seq data analysis, encompassing quality control, read alignment, peak calling, differential accessibility analysis, and motif enrichment using containerize…

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3. ChIPseq-Nextflow-Pipeline ChIPseq-Nextflow-Pipeline Public

   A reproducible Nextflow pipeline for ChIP-seq data analysis, encompassing quality control, read alignment, peak calling, and signal visualization using containerized tools.

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4. Genome-Assembly-Nextflow-Pipeline Genome-Assembly-Nextflow-Pipeline Public

   A hybrid assembly Nextflow pipeline for bacterial genomes, integrating long and short sequencing reads to produce high-quality, polished genome assemblies with comprehensive quality assessment and …

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5. ApoE-Gene-Expression-Explorer ApoE-Gene-Expression-Explorer Public

   Interactive Flask/MariaDB web application for exploring RNA-seq gene expression and differential expression across ApoE and Apoer2 genotypes.

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6. RNA-seq-Explorer-for-Huntington-s-Disease RNA-seq-Explorer-for-Huntington-s-Disease Public

   An interactive R Shiny application for exploring RNA-seq data from post-mortem prefrontal cortex samples of Huntington's Disease (HD) patients compared to neurologically healthy controls (Original …

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