schneebergerlab

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1. syri syri Public

   Synteny and Rearrangement Identifier

   Cython 487 48

2. plotsr plotsr Public

   Tool to plot synteny and structural rearrangements between genomes

   Python 355 35

3. AMPRIL-genomes AMPRIL-genomes Public

   scripts for the project of seven thaliana genomes assembly

   Python 42 19

4. findGSE findGSE Public

   findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.

   R 38 11

5. fixchr fixchr Public

   Python 21 3

6. GameteBinning_tetraploid GameteBinning_tetraploid Public

   This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings

   C++ 15 1