copier bump and tox -e deps

.copier-answers.yml

@@ -1,13 +1,13 @@
 # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_commit: 5c4fd02
+_commit: debabf7
 _src_path: gh:scipp/copier_template
 description: Transform directed acyclic graphs using map-reduce and groupby operations
-max_python: '3.13'
-min_python: '3.10'
+max_python: '3.14'
+min_python: '3.12'
 namespace_package: ''
 nightly_deps: ''
 orgname: scipp
 prettyname: Cyclebane
 projectname: cyclebane
 related_projects: Sciline
-year: 2025
+year: 2026

.github/workflows/ci.yml

@@ -15,13 +15,13 @@ jobs:
       min_python: ${{ steps.vars.outputs.min_python }}
       min_tox_env: ${{ steps.vars.outputs.min_tox_env }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - name: Get Python version for other CI jobs
         id: vars
         run: |
           echo "min_python=$(< .github/workflows/python-version-ci)" >> "$GITHUB_OUTPUT"
           echo "min_tox_env=py$(sed 's/\.//g' < .github/workflows/python-version-ci)" >> "$GITHUB_OUTPUT"
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version-file: '.github/workflows/python-version-ci'
       - uses: pre-commit/action@v3.0.1

.github/workflows/docs.yml

@@ -48,12 +48,12 @@ jobs:
 
     steps:
       - run: sudo apt install --yes graphviz pandoc
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           ref: ${{ inputs.branch == '' && github.ref_name || inputs.branch }}
           repository: ${{ github.event.pull_request.head.repo.full_name }}
           fetch-depth: 0  # history required so cmake can determine version
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version-file: '.github/workflows/python-version-ci'
       - run: python -m pip install --upgrade pip
@@ -64,12 +64,14 @@ jobs:
         if: ${{ inputs.version == '' }}
       - run: tox -e linkcheck
         if: ${{ inputs.linkcheck }}
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v7
+        id: artifact-upload-step
         with:
           name: docs_html
           path: html/
+      - run: echo "::notice::https://remote-unzip.scipp.deno.net/${{ github.repository }}/artifacts/${{ steps.artifact-upload-step.outputs.artifact-id }}"
 
-      - uses: JamesIves/github-pages-deploy-action@v4.7.2
+      - uses: JamesIves/github-pages-deploy-action@v4
         if: ${{ inputs.publish }}
         with:
           branch: gh-pages

.github/workflows/nightly_at_main.yml

@@ -12,7 +12,7 @@ jobs:
     outputs:
       min_python: ${{ steps.vars.outputs.min_python }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - name: Get Python version for other CI jobs
         id: vars
         run: echo "min_python=$(< .github/workflows/python-version-ci)" >> "$GITHUB_OUTPUT"

.github/workflows/nightly_at_main_lower_bound.yml

@@ -0,0 +1,37 @@
+name: Nightly test using lower bound dependencies
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '30 1 * * 1-5'
+
+jobs:
+  setup:
+    name: Setup variables
+    runs-on: 'ubuntu-24.04'
+    outputs:
+      min_python: ${{ steps.vars.outputs.min_python }}
+    steps:
+      - uses: actions/checkout@v6
+      - name: Get Python version for other CI jobs
+        id: vars
+        run: echo "min_python=$(< .github/workflows/python-version-ci)" >> "$GITHUB_OUTPUT"
+
+  tests:
+    name: Tests at lower bound
+    needs: setup
+    strategy:
+      matrix:
+        os: ['ubuntu-24.04']
+        python:
+          - version: '${{needs.setup.outputs.min_python}}'
+    runs-on: ${{ matrix.os }}
+    env:
+        ESS_PROTECTED_FILESTORE_USERNAME: ${{ secrets.ESS_PROTECTED_FILESTORE_USERNAME }}
+        ESS_PROTECTED_FILESTORE_PASSWORD: ${{ secrets.ESS_PROTECTED_FILESTORE_PASSWORD }}
+    steps:
+      - uses: actions/checkout@v6
+      - uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
+        with:
+          python-version: ${{ matrix.python.version }}
+      - run: uv run --extra=test --resolution=lowest-direct pytest

.github/workflows/nightly_at_release.yml

@@ -13,7 +13,7 @@ jobs:
       min_python: ${{ steps.vars.outputs.min_python }}
       release_tag: ${{ steps.release.outputs.release_tag }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0  # history required so we can determine latest release tag
       - name: Get last release tag from git

.github/workflows/python-version-ci

@@ -1 +1 @@
-3.10
+3.12

.github/workflows/release.yml

@@ -10,39 +10,16 @@ defaults:
     shell: bash -l {0}  # required for conda env
 
 jobs:
-  build_conda:
-    name: Conda build
-    runs-on: 'ubuntu-24.04'
-
-    steps:
-      - uses: actions/checkout@v4
-        with:
-          submodules: true
-          fetch-depth: 0  # history required so setuptools_scm can determine version
-
-      - uses: mamba-org/setup-micromamba@v1
-        with:
-          environment-name: build-env
-          create-args: >-
-            conda-build
-            boa
-      - run: conda mambabuild --channel conda-forge --channel scipp --no-anaconda-upload --override-channels --output-folder conda/package conda
-
-      - uses: actions/upload-artifact@v4
-        with:
-          name: conda-package-noarch
-          path: conda/package/noarch/*.tar.bz2
-
   build_wheels:
     name: Wheels
     runs-on: 'ubuntu-24.04'
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0  # history required so setuptools_scm can determine version
 
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version-file: '.github/workflows/python-version-ci'
 
@@ -53,42 +30,28 @@ jobs:
         run: python -m build
 
       - name: Upload wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: dist
           path: dist
 
   upload_pypi:
     name: Deploy PyPI
-    needs: [build_wheels, build_conda]
+    needs: [build_wheels]
     runs-on: 'ubuntu-24.04'
     environment: release
     permissions:
       id-token: write
     if: github.event_name == 'release' && github.event.action == 'published'
     steps:
-      - uses: actions/download-artifact@v4
-      - uses: pypa/gh-action-pypi-publish@v1.8.14
-
-  upload_conda:
-    name: Deploy Conda
-    needs: [build_wheels, build_conda]
-    runs-on: 'ubuntu-24.04'
-    if: github.event_name == 'release' && github.event.action == 'published'
-
-    steps:
-      - uses: actions/download-artifact@v4
-      - uses: mamba-org/setup-micromamba@v1
+      - uses: actions/download-artifact@v8
         with:
-          environment-name: upload-env
-          # frozen python due to breaking removal of 'imp' in 3.12
-          create-args: >-
-            anaconda-client
-            python=3.11
-      - run: anaconda --token ${{ secrets.ANACONDATOKEN }} upload --user scipp --label main $(ls conda-package-noarch/*.tar.bz2)
+          name: dist
+          path: dist
+      - uses: pypa/gh-action-pypi-publish@v1.14.0
 
   docs:
-    needs: [upload_conda, upload_pypi]
+    needs: [upload_pypi]
     uses: ./.github/workflows/docs.yml
     with:
       publish: ${{ github.event_name == 'release' && github.event.action == 'published' }}
@@ -101,7 +64,10 @@ jobs:
     permissions:
       contents: write  # This is needed so that the action can upload the asset
     steps:
-    - uses: actions/download-artifact@v4
+    - uses: actions/download-artifact@v8
+      with:
+          name: docs_html
+          path: docs_html
     - name: Zip documentation
       run: |
         mv docs_html documentation-${{ github.ref_name }}

.github/workflows/test.yml

@@ -45,10 +45,10 @@ jobs:
     runs-on: ${{ inputs.os-variant }}
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           ref: ${{ inputs.checkout_ref }}
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: ${{ inputs.python-version }}
       - run: python -m pip install --upgrade pip
@@ -63,16 +63,16 @@ jobs:
         ESS_PROTECTED_FILESTORE_PASSWORD: ${{ secrets.ESS_PROTECTED_FILESTORE_PASSWORD }}
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           ref: ${{ inputs.checkout_ref }}
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: ${{ inputs.python-version }}
       - run: python -m pip install --upgrade pip
       - run: python -m pip install -r ${{ inputs.pip-recipe }}
       - run: tox -e ${{ inputs.tox-env }}
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v7
         if: ${{ inputs.coverage-report }}
         with:
           name: CoverageReport

.github/workflows/unpinned.yml

@@ -13,7 +13,7 @@ jobs:
       min_python: ${{ steps.vars.outputs.min_python }}
       release_tag: ${{ steps.release.outputs.release_tag }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0  # history required so we can determine latest release tag
       - name: Get last release tag from git

.github/workflows/weekly_windows_macos.yml

@@ -13,7 +13,7 @@ jobs:
       min_python: ${{ steps.vars.outputs.min_python }}
       min_tox_env: ${{ steps.vars.outputs.min_tox_env }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - name: Get Python version for other CI jobs
         id: vars
         run: |

.gitignore

@@ -14,6 +14,7 @@ venv
 .venv
 
 # Caches
+*.DS_Store
 .clangd/
 *.ipynb_checkpoints
 __pycache__/
@@ -45,3 +46,4 @@ docs/generated/
 *.zip
 *.sqw
 *.nxspe
+*.mtz

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: check-added-large-files
       - id: check-case-conflict
@@ -10,32 +10,33 @@ repos:
       - id: check-merge-conflict
       - id: check-toml
       - id: check-yaml
-        exclude: conda/meta.yaml
       - id: detect-private-key
       - id: trailing-whitespace
         args: [ --markdown-linebreak-ext=md ]
         exclude: '\.svg'
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.7.1
+    rev: 0.8.2
     hooks:
       - id: nbstripout
         types: [ "jupyter" ]
         args: [ "--drop-empty-cells",
                 "--extra-keys 'metadata.language_info.version cell.metadata.jp-MarkdownHeadingCollapsed cell.metadata.pycharm'" ]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.0
+    rev: v0.14.6
     hooks:
       - id: ruff
         args: [ --fix ]
         types_or: [ python, pyi, jupyter ]
       - id: ruff-format
         types_or: [ python, pyi ]
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.3.0
+    rev: v2.4.1
     hooks:
       - id: codespell
         additional_dependencies:
           - tomli
+        exclude_types:
+          - svg
   - repo: https://github.com/pre-commit/pygrep-hooks
     rev: v1.10.0
     hooks:
@@ -47,7 +48,7 @@ repos:
       - id: rst-inline-touching-normal
       - id: text-unicode-replacement-char
   - repo: https://github.com/rhysd/actionlint
-    rev: v1.7.3
+    rev: v1.7.9
     hooks:
       - id: actionlint
         # Disable because of false-positive SC2046

.python-version

@@ -1 +1 @@
-3.10
+3.12

LICENSE

@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2025, Scipp contributors (https://github.com/scipp)
+Copyright (c) 2026, Scipp contributors (https://github.com/scipp)
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

README.md

@@ -1,6 +1,6 @@
 [![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg)](CODE_OF_CONDUCT.md)
 [![PyPI badge](http://img.shields.io/pypi/v/cyclebane.svg)](https://pypi.python.org/pypi/cyclebane)
-[![Anaconda-Server Badge](https://anaconda.org/scipp/cyclebane/badges/version.svg)](https://anaconda.org/scipp/cyclebane)
+[![Anaconda-Server Badge](https://anaconda.org/conda-forge/cyclebane/badges/version.svg)](https://anaconda.org/conda-forge/cyclebane)
 [![License: BSD 3-Clause](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](LICENSE)
 
 # Cyclebane