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ci(deps): update actions to latest versions#291

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mbhall88 merged 2 commits into
snakemake:masterfrom
mbhall88:master
Apr 30, 2026
Merged

ci(deps): update actions to latest versions#291
mbhall88 merged 2 commits into
snakemake:masterfrom
mbhall88:master

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@mbhall88 mbhall88 commented Apr 30, 2026

Summary by CodeRabbit

  • Chores
    • Updated CI/CD workflows with newer action versions and improved Python toolchain setup.
    • Upgraded build automation tools for enhanced reliability and maintainability.

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coderabbitai Bot commented Apr 30, 2026

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ℹ️ Review info
⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro

Run ID: aae32d43-f743-4729-a536-5245b78bc390

📥 Commits

Reviewing files that changed from the base of the PR and between c01c5c6 and 79a0cf4.

📒 Files selected for processing (3)
  • .github/workflows/ci.yaml
  • .github/workflows/conventional-prs.yaml
  • .github/workflows/release-please.yaml
📝 Walkthrough

Walkthrough

These GitHub Actions workflow updates modernize Python toolchain setup and upgrade action versions. Changes replace traditional Python setup with uv-based installation, upgrade codecov and release-please actions to newer versions, and add caching capabilities.

Changes

Cohort / File(s) Summary
CI/CD Workflow Updates
.github/workflows/ci.yaml, .github/workflows/release-please.yaml
Replaced actions/setup-python@v6 and astral-sh/setup-uv@v7 with cached setup-uv and explicit uv python install commands. Upgraded codecov-action@v5 to @v6 and googleapis/release-please-action@v4 to @v5.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~8 minutes

🚥 Pre-merge checks | ✅ 5
✅ Passed checks (5 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title accurately describes the main change: updating GitHub Actions to latest versions (setup-python, setup-uv, codecov-action, release-please-action).
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.

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🧪 Generate unit tests (beta)
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codecov Bot commented Apr 30, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 96.52%. Comparing base (0096e1b) to head (79a0cf4).
⚠️ Report is 1 commits behind head on master.

Additional details and impacted files

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #291   +/-   ##
=======================================
  Coverage   96.52%   96.52%           
=======================================
  Files          12       12           
  Lines        1497     1497           
  Branches      309      309           
=======================================
  Hits         1445     1445           
  Misses         24       24           
  Partials       28       28           
Flag Coverage Δ
unittests 96.45% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

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Actionable comments posted: 2

🤖 Prompt for all review comments with AI agents
Verify each finding against the current code and only fix it if needed.

Inline comments:
In @.github/workflows/ci.yaml:
- Line 46: The workflow currently references the mutable tag "uses:
codecov/codecov-action@v6"; replace this with an immutable commit SHA (e.g.,
"uses: codecov/codecov-action@61d526b17970389421d731e68ebbe2a06b5e88e8") so the
CI step is pinned to a specific commit, updating the action reference in the
workflow to use the provided commit SHA instead of the major tag.

In @.github/workflows/release-please.yaml:
- Line 13: Replace the mutable tag for the GitHub Action usage of release-please
by pinning googleapis/release-please-action to a specific commit SHA instead of
the v5 tag; update the line that currently uses
"googleapis/release-please-action@v5" so it references the full commit SHA for
that action (matching the security posture used for astral-sh/setup-uv),
ensuring the uses: entry points to the exact commit.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro

Run ID: 5999c5b5-b6b7-4a39-b753-f32d78fa5ee8

📥 Commits

Reviewing files that changed from the base of the PR and between 0096e1b and c01c5c6.

📒 Files selected for processing (2)
  • .github/workflows/ci.yaml
  • .github/workflows/release-please.yaml

Comment thread .github/workflows/ci.yaml Outdated
Comment thread .github/workflows/release-please.yaml Outdated
@mbhall88 mbhall88 merged commit 279e38d into snakemake:master Apr 30, 2026
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