refactor: replace raw new/delete with std::unique_ptr in NRadix#3122

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Commits on Mar 19, 2026

X-Smart-Branch-Parent: master
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feat: add devcontainer and Claude Code agent development environment

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docs: add Vertex AI setup and devcontainer build instructions to CLAUDE.md

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feat: add launcher script with worktree isolation and GitHub PAT support

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feat: use official GitHub MCP server, fix run.sh, add bubblewrap

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refactor: convert skills to collector-dev plugin with scoped tool permissions

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feat: create branch and draft PR upfront, tighten iterate permissions

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feat: add watch-ci skill for CI monitoring loop

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feat: add end-to-end task skill with CI monitoring loop

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fix: load collector-dev plugin via --plugin-dir flag

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feat: stream agent activity to stdout in autonomous mode

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feat: add --local mode for debugging without worktree or PR

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feat: add --headless mode (worktree + stream-json, no PR)

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fix: initialize submodules in worktree after creation

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fix: only init required submodules, drop --recursive

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fix: headless mode now invokes /collector-dev:task skill like default mode

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feat: add preflight checks with clear error messages

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refactor: remove gh CLI dependency, agent creates PR via GitHub MCP

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refactor: move skills from plugin to standalone, simplify CLAUDE.md

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refactor: switch worktree to clone, consolidate to 2 skills, fix audit issues

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fix: move git push deny to container-only settings

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security: remove SSH mount, git push blocked by lack of credentials

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fix: set clone remote to GitHub URL instead of local path

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refactor: switch back to worktrees, mount .git at same absolute path

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perf: shallow submodule checkout in worktrees (--depth 1)

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perf: mount submodules from main repo instead of cloning per worktree

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feat: make submodule mounting optional via --symlink-submodules

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feat: add --branch flag, use /tmp/collector-worktrees/ for worktrees

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fix: reject --branch with --local mode

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fix: mount .git read-write so git commit works in container

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security: mount .git read-only with worktree subdir read-write

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fix: set theme and verbose defaults in entrypoint to skip startup prompts

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fix: chmod worktree git dir for container uid mismatch

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fix: use chmod a+rwX to fix directory permissions in worktree git dir

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fix: mount .git read-write, partial ro/rw overlay doesn't work

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security: remove SYS_PTRACE/NET_ADMIN/NET_RAW caps, drop --symlink-submodules

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feat: specify GitHub MCP toolsets via X-MCP-Toolsets header

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feat: watch-ci updates PR body with agent status after each CI cycle

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docs: add MCP Context Protector integration plan

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fix: autonomous mode inlines task instructions instead of invoking /task skill

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feat: add /dev-loop skill combining task + watch-ci + PR comment handling

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feat: allow specifying skill in autonomous mode, default to /dev-loop

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fix: remove local keyword from case branch (not a function)

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docs: update MCP security plan — recommend mcp-watchdog over mcp-context-protector

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fix: push branch from host before launching autonomous agent

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fix: only push branch in autonomous /dev-loop mode, not for explicit skills

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feat: TUI is now default for all modes, --no-tui for stream-json

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docs: clarify push_files usage in dev-loop and watch-ci skills

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docs: add devcontainer README with GitHub PAT permissions and setup guide

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refactor: replace raw new/delete with std::unique_ptr in NRadix

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