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fiber_QA
fiber_QA
 
 
next_release
next_release
 
 
spm_png
spm_png
 
 
.DS_Store
.DS_Store
 
 
AtlasStatMap.m
AtlasStatMap.m
 
 
README.md
README.md
 
 
TPM4mm.nii
TPM4mm.nii
 
 
bmp_blend.m
bmp_blend.m
 
 
bmp_contrast.m
bmp_contrast.m
 
 
bmp_mexicanhat.m
bmp_mexicanhat.m
 
 
bmp_onCenter_offSurround.m
bmp_onCenter_offSurround.m
 
 
bmp_scramble.m
bmp_scramble.m
 
 
bmp_sinewave_1d.m
bmp_sinewave_1d.m
 
 
bmp_sinewave_2d.m
bmp_sinewave_2d.m
 
 
bmp_unsharpmask.m
bmp_unsharpmask.m
 
 
bmp_yuv.m
bmp_yuv.m
 
 
cleanup.m
cleanup.m
 
 
cmap2lut.m
cmap2lut.m
 
 
convert_ctp.m
convert_ctp.m
 
 
dicm_sort.m
dicm_sort.m
 
 
dilate_erode.m
dilate_erode.m
 
 
disco_sm.png
disco_sm.png
 
 
extract.exe
extract.exe
 
 
extract_brain.m
extract_brain.m
 
 
extractlx32
extractlx32
 
 
extractlx64
extractlx64
 
 
extractosx
extractosx
 
 
fix_qform.m
fix_qform.m
 
 
mni2fs_makegii.m
mni2fs_makegii.m
 
 
nii_3dcheckerboard.m
nii_3dcheckerboard.m
 
 
nii_anat.m
nii_anat.m
 
 
nii_atlas2nii.m
nii_atlas2nii.m
 
 
nii_batch12old.m
nii_batch12old.m
 
 
nii_change_datatype.m
nii_change_datatype.m
 
 
nii_cleanup5.m
nii_cleanup5.m
 
 
nii_clipeven_old.m
nii_clipeven_old.m
 
 
nii_combine_mask.m
nii_combine_mask.m
 
 
nii_complex2magPhase.m
nii_complex2magPhase.m
 
 
nii_contiguous.m
nii_contiguous.m
 
 
nii_coord2spheres.m
nii_coord2spheres.m
 
 
nii_cropVolumes.m
nii_cropVolumes.m
 
 
nii_dice.m
nii_dice.m
 
 
nii_dilate.m
nii_dilate.m
 
 
nii_diploe.m
nii_diploe.m
 
 
nii_dti2rgb.m
nii_dti2rgb.m
 
 
nii_dti_clean.m
nii_dti_clean.m
 
 
nii_dtibatch.m
nii_dtibatch.m
 
 
nii_enantiomorphic.m
nii_enantiomorphic.m
 
 
nii_enat_norm.m
nii_enat_norm.m
 
 
nii_extract.m
nii_extract.m
 
 
nii_fileparts.m
nii_fileparts.m
 
 
nii_fixnames.m
nii_fixnames.m
 
 
nii_fixslices.m
nii_fixslices.m
 
 
nii_flipap.m
nii_flipap.m
 
 
nii_fliplr.m
nii_fliplr.m
 
 
nii_flipz.m
nii_flipz.m
 
 
nii_fslflirt.m
nii_fslflirt.m
 
 
nii_fslver.m
nii_fslver.m
 
 
nii_getTR.m
nii_getTR.m
 
 
nii_gui.m
nii_gui.m
 
 
nii_i3m2nii.m
nii_i3m2nii.m
 
 
nii_isSPM12orNewer.m
nii_isSPM12orNewer.m
 
 
nii_jaccard.m
nii_jaccard.m
 
 
nii_label.m
nii_label.m
 
 
nii_loadhdrimg.m
nii_loadhdrimg.m
 
 
nii_make3d.m
nii_make3d.m
 
 
nii_make3d_new.m
nii_make3d_new.m
 
 
nii_make4d.m
nii_make4d.m
 
 
nii_makeDTI.m
nii_makeDTI.m
 
 
nii_makeseed.m
nii_makeseed.m
 
 
nii_mask.m
nii_mask.m
 
 
nii_meanBvec.m
nii_meanBvec.m
 
 
nii_mean_stdev.m
nii_mean_stdev.m
 
 
nii_mean_stdev_roi.m
nii_mean_stdev_roi.m
 
 
nii_merge.m
nii_merge.m
 
 
nii_merge_dki.m
nii_merge_dki.m
 
 
nii_merge_dki2k.m
nii_merge_dki2k.m
 
 
nii_merge_dki2k.m~
nii_merge_dki2k.m~
 
 
nii_merge_dti.m
nii_merge_dti.m
 
 
nii_mricro_roi2nii.m
nii_mricro_roi2nii.m
 
 
nii_neper.m
nii_neper.m
 
 
nii_new.m
nii_new.m
 
 
nii_nii2bvox.m
nii_nii2bvox.m
 
 
nii_nii2gii.m
nii_nii2gii.m
 
 
nii_nii2objMesh.m
nii_nii2objMesh.m
 
 
nii_nii2powerOf2.m
nii_nii2powerOf2.m
 
 
nii_nii2stl.m
nii_nii2stl.m
 
 
nii_nii2voi.m
nii_nii2voi.m
 
 
nii_nodz2node.m
nii_nodz2node.m
 
 
nii_orderBval.m
nii_orderBval.m
 
 
nii_p2z.m
nii_p2z.m
 
 
nii_plotBvec.m
nii_plotBvec.m
 
 
nii_qa_moco.m
nii_qa_moco.m
 
 
nii_remove_haze.m
nii_remove_haze.m
 
 
nii_render.m
nii_render.m
 
 
nii_reorient.m
nii_reorient.m
 
 
nii_rescue_par.m
nii_rescue_par.m
 
 
nii_reslice1mm.m
nii_reslice1mm.m
 
 
nii_reslice2mm.m
nii_reslice2mm.m
 
 
nii_reslice_target.m
nii_reslice_target.m
 
 

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This is a collection of Matlab scripts that can help with using SPM and FSL. These scripts are also available from my lab website which includes a brief description about each script.

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Handy scripts for SPM

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  • MATLAB 98.7%
  • Wolfram Language 1.3%