thegenemyers · jmarshall · May 11, 2021 · May 11, 2021 · May 11, 2021
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,23 @@
+*.o
+*.pico
+config.h
+htslib.pc.tmp
+htslib_static.mk
+.*-cflags
+lib*.a
+lib*.so*
+HTSLIB/version.h
+LIBDEFLATE/gzip
+LIBDEFLATE/gunzip
+FastK
+Fastcp
+Fastmv
+Fastrm
+Haplex
+Histex
+Homex
+Logex
+Profex
+Symmex
+Tabex
+Vennex
diff --git a/HTSLIB/config.h b/HTSLIB/config.h
diff --git a/HTSLIB/htslib-uninstalled.pc b/HTSLIB/htslib-uninstalled.pc
diff --git a/HTSLIB/htslib.pc.tmp b/HTSLIB/htslib.pc.tmp
diff --git a/HTSLIB/htslib_static.mk b/HTSLIB/htslib_static.mk
diff --git a/Makefile b/Makefile
@@ -14,7 +14,10 @@ deflate.lib: LIBDEFLATE
 	cd LIBDEFLATE; make; cd ..
 
 libhts.a: HTSLIB
-	cd HTSLIB; make; cd ..
+	cd HTSLIB; make libhts.a; cd ..
+
+HTSLIB/htslib_static.mk:
+	cd HTSLIB; make htslib_static.mk; cd ..
 
 libfastk.c : gene_core.c
 libfastk.h : gene_core.h

diff --git a/split.c b/split.c
@@ -1178,7 +1178,7 @@ void Distribute_Block(DATA_BLOCK *block, int tid)
                             }
                           nlst = (MAX_NRUN+nlst)-nfst;
                           fwrite(&nidx,sizeof(int64),1,nstr);
-                          if (fwrite(&nlst,sizeof(int),1,nstr) < 0)
+                          if (fwrite(&nlst,sizeof(int),1,nstr) != 1)
                             { fprintf(stderr,"%s: Cannot write to %s.  Enough disk space?\n",
                                              Prog_Name,nname[tid]);
                               exit (1);