MaAsLin2: Microbiome Multivariate Association with Linear Models
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
R package for differential expression analysis in metatranscriptomics
MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
MaAsLin is a multivariate statistical framework that finds associations between clinical metadata and potentially high-dimensional experimental data.
The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation) package is designed to assess the significance of general similarity measures in compositional datasets.
Keep your documentation close to your code --- with extractable comments.
Wrapper around SparseDOSSA2, a R library for the simulation of null and metadata-associated microbial abundance profiles.
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